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mmu_circRev1_1026
Basic information of circular RNA
PanCircBase ID:
mmu_circRev1_1026
mm39_Chr. Position ID:
chr1|38127051|38138102|-
Gene name:
Rev1
Transcript:
ENSMUST00000027251.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
6,5,4
Exon/intron offsets:
0,4092,10882
Genomic length:
11051
Exon/intron sizes in nt:
70,41,53,169
Flanking exon/introns:
chr1:38124733-38127051|chr1:38138102-38146648
Splice length:
1026
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATCCTTCTGCGGAGGAATTGAGAAATCTAATGATGTTGCATGGAGGTCAATACCATGTGTATTATTCTAGATCCAAAACAACACACATTATTGCTACAAATCTTCCTAATGCCAAAATTAAAGAATTAAAGGGGGAAAAAGTAATACGACCAGAATGGATTGTGGAAAGCATCAAAGCTGGGAGACTCTTGTCCTCTGCTCCCTATCAGCTCTACACCAAGCCGTCGGCTGCACAGAAGAGTCTCAACTTCAATCCTGTGTGCAAACCTGAGGATCCTGGGCCAGGTCCAAGCAATAGAGCCAAACAGCTCAACAACAGGGTAAATCACATAATTAAGAAGATTGAGACAGAAAGTGAAGTGAAAGCAAATGGACTGAGCAGCTGGAATGAAGACGGTGTAAATGATGATTTTAGTTTTGAGGATCTGGAACATACATTTCCAGGAAGGAAACAGAATGGAGTAATGCATCCCAGAGATACCGCTGTCATTTTTAATGGACACACCCATAGTTCAAATGGTGCCTTAAAGACACAGGATTGCTTGGTGCCTGTGGGCAACAGTGTTGCTAGCAGGCTATCTTTAGACTCCACCCAGGAGGAGAAGAGGGCAGAGAAGAGCAACGCGGACTTCAGAGACTGCACAGTGCAGCACTTGCAACACAGCACCAGAAGTGCAGATGCTTTGCGGAGTCCACACAGAACTAATTCTCTCTCACCATCTTTGCACAGTAACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTCAAGCACAAAAAGCACTTCTGTTCTGACTCTTAGTAAAGTAGCGCCTTCAGTGCCATCCAAACCCTCGGACTGCAACTTCATTTCAGATTTCTATTCTCGTTCAAGACTGCATCACATCTCAACATGGAAGTGTGAATTGACTGAGTTTGTCAATACCCTACAGAGACAAAGTAGTGGTATCTTTCCGGGAAGGGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCTCTTGTTGTAACTGACACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTACAGAGACAAAGTAGTGGT
59.17
TTGACCTCCATGCAACATCA
57.42
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCTACAGAGACAAAGTAGTGG
59.17
TTGACCTCCATGCAACATCA
57.42
144
PCR template sequence:
GTCAATACCCTACAGAGACAAAGTAGTGGTATCTTTCCGGGAAGGGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCTCTTGTTGTAACTGACACAGATCCTTCTGCGGAGGAATTGAGAAATCTAATGATGTTGCATGGAGGTCAATACCATGTGTATTATTCTAGATCCAAAACAACACACATTATTGCTACAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-29b-3p(2), mmu-miR-29a-3p(2), mmu-miR-29c-3p(2), mmu-miR-20b-5p(1), mmu-miR-200a-3p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-7b-5p(1), mmu-miR-106b-5p(1), mmu-miR-298-5p(1), mmu-miR-326-3p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-182-5p(1), mmu-miR-218-5p(1), mmu-miR-183-5p(1), mmu-miR-1187(1), mmu-miR-369-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GTAACTGACACAGATCCTTCTGCGGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCREV1_1026_ORF_1
0.8324
0.030496571
0.999982841
2022
ORF sequence:
ATGATGTTGCATGGAGGTCAATACCATGTGTATTATTCTAGATCCAAAACAACACACATTATTGCTACAAATCTTCCTAATGCCAAAATTAAAGAATTAAAGGGGGAAAAAGTAATACGACCAGAATGGATTGTGGAAAGCATCAAAGCTGGGAGACTCTTGTCCTCTGCTCCCTATCAGCTCTACACCAAGCCGTCGGCTGCACAGAAGAGTCTCAACTTCAATCCTGTGTGCAAACCTGAGGATCCTGGGCCAGGTCCAAGCAATAGAGCCAAACAGCTCAACAACAGGGTAAATCACATAATTAAGAAGATTGAGACAGAAAGTGAAGTGAAAGCAAATGGACTGAGCAGCTGGAATGAAGACGGTGTAAATGATGATTTTAGTTTTGAGGATCTGGAACATACATTTCCAGGAAGGAAACAGAATGGAGTAATGCATCCCAGAGATACCGCTGTCATTTTTAATGGACACACCCATAGTTCAAATGGTGCCTTAAAGACACAGGATTGCTTGGTGCCTGTGGGCAACAGTGTTGCTAGCAGGCTATCTTTAGACTCCACCCAGGAGGAGAAGAGGGCAGAGAAGAGCAACGCGGACTTCAGAGACTGCACAGTGCAGCACTTGCAACACAGCACCAGAAGTGCAGATGCTTTGCGGAGTCCACACAGAACTAATTCTCTCTCACCATCTTTGCACAGTAACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTCAAGCACAAAAAGCACTTCTGTTCTGACTCTTAGTAAAGTAGCGCCTTCAGTGCCATCCAAACCCTCGGACTGCAACTTCATTTCAGATTTCTATTCTCGTTCAAGACTGCATCACATCTCAACATGGAAGTGTGAATTGACTGAGTTTGTCAATACCCTACAGAGACAAAGTAGTGGTATCTTTCCGGGAAGGGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCTCTTGTTGTAACTGACACAGATCCTTCTGCGGAGGAATTGAGAAATCTAATGATGTTGCATGGAGGTCAATACCATGTGTATTATTCTAGATCCAAAACAACACACATTATTGCTACAAATCTTCCTAATGCCAAAATTAAAGAATTAAAGGGGGAAAAAGTAATACGACCAGAATGGATTGTGGAAAGCATCAAAGCTGGGAGACTCTTGTCCTCTGCTCCCTATCAGCTCTACACCAAGCCGTCGGCTGCACAGAAGAGTCTCAACTTCAATCCTGTGTGCAAACCTGAGGATCCTGGGCCAGGTCCAAGCAATAGAGCCAAACAGCTCAACAACAGGGTAAATCACATAATTAAGAAGATTGAGACAGAAAGTGAAGTGAAAGCAAATGGACTGAGCAGCTGGAATGAAGACGGTGTAAATGATGATTTTAGTTTTGAGGATCTGGAACATACATTTCCAGGAAGGAAACAGAATGGAGTAATGCATCCCAGAGATACCGCTGTCATTTTTAATGGACACACCCATAGTTCAAATGGTGCCTTAAAGACACAGGATTGCTTGGTGCCTGTGGGCAACAGTGTTGCTAGCAGGCTATCTTTAGACTCCACCCAGGAGGAGAAGAGGGCAGAGAAGAGCAACGCGGACTTCAGAGACTGCACAGTGCAGCACTTGCAACACAGCACCAGAAGTGCAGATGCTTTGCGGAGTCCACACAGAACTAATTCTCTCTCACCATCTTTGCACAGTAACACTAAAATCAATGGTGCTCACCACTCCACTGTTCAGGGGCCTTCAAGCACAAAAAGCACTTCTGTTCTGACTCTTAGTAAAGTAGCGCCTTCAGTGCCATCCAAACCCTCGGACTGCAACTTCATTTCAGATTTCTATTCTCGTTCAAGACTGCATCACATCTCAACATGGAAGTGTGAATTGACTGAGTTTGTCAATACCCTACAGAGACAAAGTAGTGGTATCTTTCCGGGAAGGGAAAAGTTAAAAAAAGTGAAAACAGGCAGGTCTTCTCTTGTTGTAACTGACACA
Peptide sequence:
MMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSSAPYQLYTKPSAAQKSLNFNPVCKPEDPGPGPSNRAKQLNNRVNHIIKKIETESEVKANGLSSWNEDGVNDDFSFEDLEHTFPGRKQNGVMHPRDTAVIFNGHTHSSNGALKTQDCLVPVGNSVASRLSLDSTQEEKRAEKSNADFRDCTVQHLQHSTRSADALRSPHRTNSLSPSLHSNTKINGAHHSTVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQRQSSGIFPGREKLKKVKTGRSSLVVTDTDPSAEELRNLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELKGEKVIRPEWIVESIKAGRLLSSAPYQLYTKPSAAQKSLNFNPVCKPEDPGPGPSNRAKQLNNRVNHIIKKIETESEVKANGLSSWNEDGVNDDFSFEDLEHTFPGRKQNGVMHPRDTAVIFNGHTHSSNGALKTQDCLVPVGNSVASRLSLDSTQEEKRAEKSNADFRDCTVQHLQHSTRSADALRSPHRTNSLSPSLHSNTKINGAHHSTVQGPSSTKSTSVLTLSKVAPSVPSKPSDCNFISDFYSRSRLHHISTWKCELTEFVNTLQRQSSGIFPGREKLKKVKTGRSSLVVTDT
IRESfinder result
IRESfinder score
0.668096474
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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