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mmu_circRars_1407
Basic information of circular RNA
PanCircBase ID:
mmu_circRars_1407
mm39_Chr. Position ID:
chr11|35706465|35724133|-
Gene name:
Rars
Transcript:
ENSMUST00000018992.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,998,1711,4235,5457,8757,10348,10838,11719,12986,17533
Genomic length:
17668
Exon/intron sizes in nt:
10,61,10,17,91,05,13,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:35700627-35706465|chr11:35724133-35725263
Splice length:
1407
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAAAGGGAGATTAAGGCTCTGACTGCTGAGATCGACCGGCTGAAGAACTGTGGCTGCTTGGAAGCTTCTCCAAGTTTGGAACAGTTACGAGAAGAAAATTTAAAATTGAAGTATAGGCTGAATATTCTTCGAAGGAGTCTTCAGGAAGAAAGGAGAAAACCAACTAAAAACATGATTAACATCAACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATGGGTATTTCTCAGATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATGTGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGTGCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAAGGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCCGGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTTGATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATATCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGACATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTTTGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTTGCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCGTCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTCAGGTGAAACTGTGCG
60.04
CAGTTCTTCAGCCGGTCGAT
60.11
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTCAGGTGAAACTGTGCG
60.04
TCCAAGCAGCCACAGTTCTT
59.82
152
PCR template sequence:
ATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAGGAAAGGGAGATTAAGGCTCTGACTGCTGAGATCGACCGGCTGAAGAACTGTGGCTGCTTGGAAGCTTCTCCAAGTTTGGAACAGTTACGAGAAGAAAATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-183-5p(2), mmu-miR-207(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-148b-3p(1), mmu-miR-214-3p(1), mmu-miR-136-5p(1), mmu-miR-212-3p(1), mmu-miR-5101(1), mmu-miR-539-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGAGAGACAAGGAAAGGGAGATTA
siRNA sets
TAATCTCCCTTTCCTTGTC, ATCTCCCTTTCCTTGTCTC, TCTCCCTTTCCTTGTCTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRARS_1407_ORF_1
1.1494
0.266080276
0.999999958
2643
ORF sequence:
ATGATTAACATCAACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATGGGTATTTCTCAGATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATGTGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGTGCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAAGGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCCGGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTTGATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATATCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGACATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTTTGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTTGCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCGTCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAGGAAAGGGAGATTAAGGCTCTGACTGCTGAGATCGACCGGCTGAAGAACTGTGGCTGCTTGGAAGCTTCTCCAAGTTTGGAACAGTTACGAGAAGAAAATTTAAAATTGAAGTATAGGCTGAATATTCTTCGAAGGAGTCTTCAGGAAGAAAGGAGAAAACCAACTAAAAACATGATTAACATCAACAGCCGCCTGCAGGAAGTCTTTGGCTGTGCCATTAGGGCTGCATATCCAGACTTGGAGAACCCTCCCCTGATCGTGACACCAAGTCAGCAGCCCAAGTTTGGAGACTATCAGTGTAATAGTGCCATGGGTATTTCTCAGATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATGTGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGTGCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAAGGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCCGGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTTGATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATATCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGACATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTTTGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTTGCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCGTCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAG
Peptide sequence:
MININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGISQMLKAKEQKVSPREIAENITKHLPNNKYIDKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDKEREIKALTAEIDRLKNCGCLEASPSLEQLREENLKLKYRLNILRRSLQEERRKPTKNMININSRLQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGISQMLKAKEQKVSPREIAENITKHLPNNKYIDKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDK
IRESfinder result
IRESfinder score
0.583868275
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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