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mmu_circRars_1083
Basic information of circular RNA
PanCircBase ID:
mmu_circRars_1083
mm39_Chr. Position ID:
chr11|35706465|35718293|-
Gene name:
Rars
Transcript:
ENSMUST00000018992.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,998,1711,4235,5457,8757,10348,10838,11719
Genomic length:
11828
Exon/intron sizes in nt:
10,61,10,17,91,05,13,00,00,00,00,00,000
Flanking exon/introns:
chr11:35700627-35706465|chr11:35718293-35719451
Splice length:
1083
Other database IDs:
circAtlas: mmu-Rars_0013
circBase: hsa_circ_0128548, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_137053
Human Ortholog IDs:
Mature spliced Sequence:
ATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATGTGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGTGCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAAGGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCCGGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTTGATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATATCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGACATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTTTGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTTGCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCGTCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGTTCAGGTGAAACTGTGCG
60.04
TGTTCGGCAGGTGTTTGGTA
59.82
163
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGTGAAACTGTGCGCCTTA
59.89
TGTTCGGCAGGTGTTTGGTA
59.82
158
PCR template sequence:
ATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAGATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-207(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-148b-3p(1), mmu-miR-214-3p(1), mmu-miR-136-5p(1), mmu-miR-212-3p(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGAGAGACAAGATGCTCAAGGCAA
siRNA sets
TTGCCTTGAGCATCTTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRARS_1083_ORF_1
1.1754
0.259207832
0.999998738
2166
ORF sequence:
ATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATGTGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGTGCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAAGGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCCGGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTTGATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATATCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGACATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTTTGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTTGCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCGTCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAGATGCTCAAGGCAAAGGAACAGAAAGTCAGTCCCAGAGAAATCGCAGAAAACATTACCAAACACCTGCCGAACAATAAATATATTGACAAAGTTGAAATTGCGGGTCCTGGTTTCATTAATGTGCACCTGAGAAAAGACTTTGTGTCAGAACAGCTAACCAGTCTCCTAGTGAATGGAGTCCAGCTGCCTGTGCTTGGAGACAAGGAGAAGGTTATAGTTGACTTTTCCTCTCCCAACATAGCTAAGGAGATGCATGTTGGCCACCTCAGGTCAACCATCATAGGAGAGAGCATGAGCCGCCTCTTTGAATTTGCAGGATACGATGTGCTAAGGTTAAACCATGTAGGAGATTGGGGAACCCAGTTTGGCATGCTCATCGCTCACCTGCAAGATAAATTTCCGGATTATCTGACAGTTTCACCTCCTATTGGGGATCTGCAGGCCTTTTATAAGGAATCTAAGAAGAGGTTTGATGCTGATGAGGAGTTTAAGAAGCGAGCCTATCAGTGTGTCGTTTTGCTGCAGAGTAAAAACCCAGATATCATGAAAGCCTGGAACCTCATCTGTGACGTGTCCCGGGAAGAGTTTAAGAAAATCTATGATGCATTGGACATCACTTTAATAGAGAGAGGAGAATCCTTCTATCAAGATAGGATGAAGGACATTGTAAAGGAATTTGAAGATAAAGGGTTTGTGCAAGTGGATGATGGCAGAAAAATTGTGTTCGTGCCTGGGTGTTCTGTGCCATTAACGATAGTGAAATCAGATGGGGGCTATACCTATGACACATCTGACCTGGCTGCCATCAAACAGAGACTGTTTGAAGAAAAAGCAAACAAGATTATTTATGTGGTGGACAATGGACAAGCTATACACTTCCAGACAATATTTGCTGCTGCTCAGATGATTGGCTGGTATGACCCGAAAGTAACTCTAGTGACCCACGTGGGATTTGGTGTCGTCCTAGGAGAAGACAAGAAGAAATTTAAAACACGTTCAGGTGAAACTGTGCGCCTTATGGACCTGCTGGAAGAAGGGCTGAAACGGTCCATGGACAAGCTAAAGGAGAAAGAGAGAGACAAG
Peptide sequence:
MLKAKEQKVSPREIAENITKHLPNNKYIDKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDKMLKAKEQKVSPREIAENITKHLPNNKYIDKVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDK
IRESfinder result
IRESfinder score
0.559534305
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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