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mmu_circRanbp17_604
Basic information of circular RNA
PanCircBase ID:
mmu_circRanbp17_604
mm39_Chr. Position ID:
chr11|33193109|33233990|-
Gene name:
Ranbp17
Transcript:
ENSMUST00000102815.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
25,24,23,22
Exon/intron offsets:
0,21526,23000,40798
Genomic length:
40881
Exon/intron sizes in nt:
167,139,215,83
Flanking exon/introns:
chr11:33169269-33193109|chr11:33233990-33239563
Splice length:
604
Other database IDs:
circAtlas: mmu-Ranbp17_0019
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_137064
Human Ortholog IDs:
Mature spliced Sequence:
GTCTCAGCGTTTGAATTTTGATGTATCCTCTCCTAATGGAATTCTTCTCTTCAGAGAAGCCAGCAAAATGATTTGCACCTACGGAAATCAGATCCTGTCTCTTGGAAGTCTCTCCAAAGATAAGATTTATCCAATGAAACTCAAGGGCATCTCCATCTGCTACTCAGCTCTCAAGTCTGCATTGTGTGGAAATTATGTCAGCTTTGGCGTCTTCAAGTTGTATGGGGACAACCATTTTGACAATGTACTCCAGGCCTTTGTCAAAATGCTGCTTTCAGTGTCTCACAGTGACTTGCTGCAATACCGGAAGCTGAGCCAGTCTTACTATCCACTGCTGGAATGTCTCACCCAGGACCACATGAGCTTCATCACCAACTTGGAGCCTCCTGTGCTCCTGTACGTTCTCACATCTCTCTCAGAGGGACTCACCACACTTGACACAGTGGTCTCCTCCAGCTGCTGTACAAGTTTAGACTACATGGTCACCTATCTCTTCAAGCACATAGCAAAAGAAGGGAAGAAGCCACTTCGAAGCAGAGAGGCTATGCAGGCTGGTCAGAGACTGTTACATTTTATGCAACAAAACCCAGATGTTCTGCAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACTTCGAAGCAGAGAG
59.75
TTGCTGGCTTCTCTGAAGAG
57.53
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGCCACTTCGAAGCAGAGAG
59.75
TTTGCTGGCTTCTCTGAAGAG
58.22
150
PCR template sequence:
AGCAAAAGAAGGGAAGAAGCCACTTCGAAGCAGAGAGGCTATGCAGGCTGGTCAGAGACTGTTACATTTTATGCAACAAAACCCAGATGTTCTGCAGCAGGTCTCAGCGTTTGAATTTTGATGTATCCTCTCCTAATGGAATTCTTCTCTTCAGAGAAGCCAGCAAAATGATTTGCACCTACGGAAATCAGATCCTGTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-103-3p(1), mmu-let-7e-5p(1), mmu-miR-19b-3p(1), mmu-miR-19a-3p(1), mmu-miR-132-3p(1), mmu-miR-149-5p(1), mmu-miR-127-5p(1), mmu-miR-411-3p(1), mmu-miR-212-3p(1), mmu-miR-218-5p(1), mmu-miR-107-3p(1), mmu-miR-224-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTTCTGCAGCAGGTCTCAGCGTTTG
siRNA sets
AAACGCTGAGACCTGCTGC, AACGCTGAGACCTGCTGCA, CAAACGCTGAGACCTGCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCRANBP17_604_ORF_1
0.9513
0.172047994
0.840351447
618
ORF sequence:
ATGTTCTGCAGCAGGTCTCAGCGTTTGAATTTTGATGTATCCTCTCCTAATGGAATTCTTCTCTTCAGAGAAGCCAGCAAAATGATTTGCACCTACGGAAATCAGATCCTGTCTCTTGGAAGTCTCTCCAAAGATAAGATTTATCCAATGAAACTCAAGGGCATCTCCATCTGCTACTCAGCTCTCAAGTCTGCATTGTGTGGAAATTATGTCAGCTTTGGCGTCTTCAAGTTGTATGGGGACAACCATTTTGACAATGTACTCCAGGCCTTTGTCAAAATGCTGCTTTCAGTGTCTCACAGTGACTTGCTGCAATACCGGAAGCTGAGCCAGTCTTACTATCCACTGCTGGAATGTCTCACCCAGGACCACATGAGCTTCATCACCAACTTGGAGCCTCCTGTGCTCCTGTACGTTCTCACATCTCTCTCAGAGGGACTCACCACACTTGACACAGTGGTCTCCTCCAGCTGCTGTACAAGTTTAGACTACATGGTCACCTATCTCTTCAAGCACATAGCAAAAGAAGGGAAGAAGCCACTTCGAAGCAGAGAGGCTATGCAGGCTGGTCAGAGACTGTTACATTTTATGCAACAAAACCCAGATGTTCTGCAGCAG
Peptide sequence:
MFCSRSQRLNFDVSSPNGILLFREASKMICTYGNQILSLGSLSKDKIYPMKLKGISICYSALKSALCGNYVSFGVFKLYGDNHFDNVLQAFVKMLLSVSHSDLLQYRKLSQSYYPLLECLTQDHMSFITNLEPPVLLYVLTSLSEGLTTLDTVVSSSCCTSLDYMVTYLFKHIAKEGKKPLRSREAMQAGQRLLHFMQQNPDVLQQ
IRESfinder result
IRESfinder score
0.696661205
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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