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mmu_circPtpn2_91
Basic information of circular RNA
PanCircBase ID:
mmu_circPtpn2_91
mm39_Chr. Position ID:
chr18|67844906|67844997|-
Gene name:
Ptpn2
Transcript:
ENSMUST00000120934.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
91
Exon/intron sizes in nt:
91
Flanking exon/introns:
chr18:67828794-67844906|chr18:67844997-67857511
Splice length:
91
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAAATTCGAAATGAATCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAACCGAAACAGATACAGAGATGTAAGCCCAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCAGAAAACAGAAACCGAAACA
58.99
TGGCCACTCTATGAGGATAGTCA
60.12
87
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACAGAGATGTAAGCCCATGA
55.92
TGGCCACTCTATGAGGATAGTCA
60.12
61
PCR template sequence:
TTCCAGAAAACAGAAACCGAAACAGATACAGAGATGTAAGCCCATGAAATTCGAAATGAATCCCATGACTATCCTCATAGAGTGGCCAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-27a-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GATGTAAGCCCATGAAATTCGAAATG
siRNA sets
CATTTCGAATTTCATGGGC, ATTTCGAATTTCATGGGCT, TTTCGAATTTCATGGGCTT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPTPN2_91_ORF_1
1.0156
0.084230148
0.08420661
87
ORF sequence:
ATGAAATTCGAAATGAATCCCATGACTATCCTCATAGAGTGGCCAAGTTTCCAGAAAACAGAAACCGAAACAGATACAGAGATGTAA
Peptide sequence:
MKFEMNPMTILIEWPSFQKTETETDTEM
IRESfinder result
IRESfinder score
0.427905189
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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