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mmu_circPten_45
Basic information of circular RNA
PanCircBase ID:
mmu_circPten_45
mm39_Chr. Position ID:
chr19|32769948|32769993|+
Gene name:
Pten
Transcript:
ENSMUST00000013807.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
45
Exon/intron sizes in nt:
45
Flanking exon/introns:
chr19:32753499-32769948|chr19:32769993-32775470
Splice length:
45
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTTTTGGATTCAAAGCATAAAAACCATTACAAGATATACAATCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
ACCATTACAAGATATACAATCTGTTTTTGGATTCAAAGCATAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AGATATACAATCTGTTTTTGGATTCA
siRNA sets
CAAAAACAGATTGTATATC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.844957962
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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