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mmu_circPrr14l_5710
Basic information of circular RNA
PanCircBase ID:
mmu_circPrr14l_5710
mm39_Chr. Position ID:
chr5|32977209|33009342|-
Gene name:
Prr14l
Transcript:
ENSMUST00000120129.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
9,8,7,6,5,4,3,2
Exon/intron offsets:
0,727,2201,7092,11939,15750,24178,32016
Genomic length:
32133
Exon/intron sizes in nt:
1,07,17,27,24,59,45,47,00,00,000
Flanking exon/introns:
chr5:32953005-32977209|chr5:33009342-33011436
Splice length:
5710
Other database IDs:
CIRCpedia: MMU_CIRCpedia_221181, circAtlas: mmu-Prr14l_0020
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
AGGAGGCCTCTTCTCCAAATTCCCTCATGGAAGAATTGGATACAGTGTCTGAATGTCCCTTATGGAGGGGCTGGCTGCAGGATCTGAATCTTTGGAAAAGAAAGCCCTTTTCTCAAGGGTAAACCATTGATGCAAAAGACTTGACTCCATAATCTCCATCTGCCCTAATGCTGTCATCTGGAGTAGAGACCCAGCCAGTTCCACTTGATTCCTCCATGTCTGCTGTGGTACAGGAATTGTACTCGGAACTCTCAGTAAGTGTCTCCAAAGAGCTTCATGCTGAGCAGGAGCCAAGTAAGATTGCAGATGTAAAGCCTGGAGCCTCACGCTCTCCTCTAAGTCATGGCAGGGCCTCACCCCTGGGGTTGCAGAGGACTCATGCAGAAGGTTGTCGAGAAGAAAGCTCTGAGACCTTGGATTGTCGGGGCAAGAATGGGTGGTGCGGACTAGTGGATCCTACAAGAGATCCTATGGCTTATGAGATCTTGGATAGGGAAGAGAGACCCAAGAGCATGGAGCCAAAGGTCTTCAGAGATCAAGGAGACCAGGCACAAGTTTTCAGAGACCCATGTGAGGGAGCAAAGGAAGACCCGTGCCAACATTCCACAGCTACTAAAGAAAAGATCTGCCCCTGTCAGGATCTCCTCCCGAGACAATCCAGCAAAGGACCTGTGTGTGCAGACCTCCCTGGAGAGCCACAAAACAACGGAGGAAATGTACACAATACAACTGCAGCTCTGCCAGAACTCACAGAAGAGAGACAAGGGACCTGTACTGTTTCCAGAATGAGCAAAGGGAAAGAAGAGTCATGTGACTTAGACCCTGTCTGGGAAGAAGCTGACAATCACCAGCAGAGTCTCAGCCACTGCAAGGAAAAGCACAGTTCAGCACACAATAGCTCCATCACTAAAGGAAGCATAGATACTGTAAAGCCCTCCGAAGAAAATTCTAAAATCTTATATCTCACATCATTTTTGTCTGGTCCAAAATCCTTAGAAAAATGTGGTTTCGAATGTAGTGGATTGATAAAGGCGTGTGCTGAAAAAACCCAGAAGGTTGATCAAATGGAGGACTTCACTTGTGGAGAAGAAAGGGCTGTGGAATCCAGTAACCACAGCAACTGTCACACTGAAGCTGGTTGTCCCTGTACAGACAGCTGTACTTCCATGCGTAATTCTTCTACTGAAGCCACAGAAATTATGTTTAAAAAAACCGATGTGAAAATTACTTTAAACCTTCATGGTAATTTGATAAACTCTGAGGACCATAGAAAAACTGTTGATGTGACCCATCCTGAGAAACGCTCTGAGGAAAGCAGCTTTTCCTTGTTGGTGCATATTGAAGAACCTGAACAAACAACTGTAAAGTCCAGTGCATTAAATGGGAAGATTTACAGTAAAGATGCTACTAAGTCTGTAGTCAGCATCCAGAGGAGTCTGGGTGACTCTCTGCCAAGTACAGCATTGTGCAACAACTTTCTGTTTGAAAGAAAGCCTCCTCAGAGTTTGATGTCAGAAGACCCAGGAAGTTCTGAACATAATGAAATATCAAAACCCAAGAAAGGTACTGCAAAATTACCATCATCTCCAGGAAAACCTGTTCAGACCTCATGTGACAGCATCTCACATTTTGATGAACCCATCACCACCTGTGAGATGAGTAAACGTTCTCCTAACCGAGCCCTGGTTGCACACAAAATAGAGCATGAATGTGTTTCACATCAACAAGTGTCCCTTAGTTCTCAAGACCATGTGACAACTGGCTCTCTAAGTATAAACAGAGAAATGCCTTCAGCAACATGCAGAGATGTTCAAGAGAGCCACCATTCTCTGGAGAATGGAGTAAATGTTACCCCTGATACTCAAACCATTCCTGCTGAGACAAAAATGGAAGCCATGTCTCCACAAGGTGACAGAGCCTGTGGTGCCTCTTCATTCATACAAACCTTAAACAACAAAACAAGAAGCTCAGAAGGGCAAAAAGAAATGACTGCTGTACATTCCACGTTCTTCTCAAGTGTGAGAGGAGCAGCTGCCTCTTCCTTTGTCACAGAGTGTCAAAATGTTCAGTCTCAGGATATCTTCAGCTGTCACTGCATAACACGAGATGCATCTGAAAAGAACATGTGTTCTGCTTCTGCTGCCTGTGAACTGAGAAAAGATTCTCTGAAAGTTAGCAACTGTAAAATCAAATGTGGAAATACATCTCAGGATGGTAATCACTGTTCCCAAAGACCAGAAGGTTTTGTAGAAAAGAGCACCCTCTTGGAGAGTGAACCTGCTGGGAGAGAAGTGCAAAGCAGCTTTCTAGAAGGCAAGGTCAGAAGTGCAGTGGCAGCAGCTGTGACACATACTGCTTCTCTGAACACAGCCACTCACATGGAAACTGGTGATGAAGGACTGCTTGGAAAGAAACAAGATCAACGCATAGACACTGAGATTTATAAACACAGCACCTCTGCCTGTGACACACAAGAACTAAAGCAATCTGCAAACATTCCAAGTCCTGAAACATTAGTGGACCAGTCTCTGAGTATTCTTTCATCTCATTTTAAAACCATGTACCAAGCAGCTGAAAATCTTCACCAGAAAGCAGATGAAGTCTCTGACTGTCAGAGTAACCAAAATATTCTAGACAAGTGCAGATGTGAAGGTAAGCCAGCCGGGGAAGGACTAAATGGTGACTTTGGAGAGACGGACCCTGAGGTCAGCCACAGGCAGAAGGATCTGACAGTCAGCTCAGGCAGTAAAGTCCCTCTGTCTTGTGGTGGTTTAAAGATAAAAGATCCCAAAAGAGCCTTTATAGATATTCCTGGTTCTGAAGAGTTCACACACAGTATGCTAGATGTCATATGTCCAGACTGCACAGATGAGCCTCCAGAGGGAGTGCTGGGTGTGGAAGCATCTAGTCTGTCTGGTCATTGTACAAGGCAAGATACACTGGCATACCACGAGACTATAAGAAGTACCTCATTGCTTCAAGGAGAACTGAATGTTGAATGTCAAGGTACAGAACTCCCAAATGCTGCTGCTTCTTCAGTAGACTCTTCTGAAATACAAAAATCACATGAAGAAAAAGTATGCAACTCTCTAAAAGACTATGAAATGGAAGACTGTCCAGACTCTGCCATTGATCATGAAGTAAAATCTGTTGTAGATCATGAACCAAATATAAGAGCACTGGATAGAGCAGGTGTATCTTTAAATTCCATTCATTGTGAGCATCAAGGTAAAGGAGGATCCATGATAGAAGGGCTGAGACTTGAAGCAAATTCTGAGTTTGGCAAGAGGAAAACCTTTGGATTATCCTTAAAAGACTCAGTGTCTCCTGGGTGCCAAGACTCTGTCAAGATGGTGCACTCTTGTCTGTCTTCTCGGGAACATTCACCAGCTGGTATTTTTGATGAAATGCCTAACTCAAAACATCACTTTAAACCCAAAGATGATGAAATGCTTTGTGAAAATGTCAAGGATTGCACAGTCCTTTCTGACATGAAGGCAGGAATACCAATGGATTTACATAACCCTAGTGAAGGAGATAGCACATACATCAGTGTCAACAAAAAGGTTTGCAAAACTTGTCACTCTCTTAAGAATTCCATTGATAAACATTTGCCTATGACAATGGAAACAGCAATTAGAATGAATAAAGAAGAAACTGAAAAACATCAGACTGGACTACTGGGTCACATACCTGTTGGAAAAGCATCTGAGGAGACCAGAGAAGGTCATGGTGGTAATTCTCAGACCCACTTGAAATGCCAGAGAGTGCAAAATGTTACTGAAGCCCCACAAAACCAGGGACCTGTGGACTCTGCCTTGCCAAAGGAAGCATGTACATATCAAAAGGGCACACATGCACTGCTGGGACAACACTTGTCGTCAGGCACAGTGTCAGATGAGGTGCAGGATAAGCAACCTGTGGCTGACCAAGATGAGTCCATCCTGATAGGAGCAATCACCCTAAGAAAGCCATCCAAGGACAGAATTGCTAGACAGCTTCAGTGGTTGAAATACCCAAAAGAAGAAAGCTTATGTCATTCATTAAAGAAAGACACTGAGTTATGCACAGGTACTTGCCTTCCTGGTGCCTCCTGGAAAGAACATGACCCCAGCTTTGCTGGAGGTGACCGAATACACGGTGCCTTTGTGACTCTGTCACATCAGCACAGATTGCTTTCTGTAAAGAAGCAGCCGCATCGGACATGTAAGAGAATTTCCTGTCAGGAGCCGGTCACTGTGCGGAGAAAAATAAGTAAAGTGAGAAATTCTGATTGTGGAAAGAGTTTCTCTAACCCAATCCCCACAAAAGCACACAGACTTCTCAGCCCATGTACTGTGCCTGCCAAGCCATTGGAACCTGAAACCGTAGCTAGCGAGAACTTGCGCAGCCACATACCAAAGCCGAAGGCTACTCTGTGCCATTCCTTGAGGAGCCGGAGTTGTAGGAAGCCTACCAAAGAATCAGCCTTACTAAGCAAGCTGTCTGTCCTTGCCTCCAGACTGACAACGGCAACAAAGCCCCAGGAACTTAGATGTCGGCGGGATTCCTCTTCCCTTGTTCCATTGGCTAAAAACTACAAGCGCCTCAGATATAAAAAGCTCCTAGATGGATTTTCACATAATGCAATGCAGCTGGACCCATATTTGGCAGCTACTGGGTGGAATAGAGGGTCTAACAGTAGGCCCTTGGCACTTTATTCTCTTGAAGCTGTTAAAATGAGCTTCATAGATTTGAGCAACAAGATGCCATCACTGCTGTTTGGTACGGAAAACGTCCCATTTTCCTTTCATGTGAAATCAGTGTCCAGCTGCATGGCTGAGTCCTCCAGGACTTTTCCTGAGCACTGCGCTCCATCGAGGCTTGCCTTAACAGAGGCCTCCCAGTGCTCAGCTCCAGCTCCCAAGTGGACCTTCTCTTTTTTCTTGTCCCATGGTTGCCCTGGGATGGCCACATTCAGGGAAGACACTGGCCTCAGTAGTCAGACACACACTCAGGCTCCTCTCCAAGAATATGGAGGCACTGCCATAGTTCAGACCAGGGCAGACCGCTCTGGCCTTGGCCTTCACACACTTCTAGCACTTTGTTCACCCGGATGTTACCGAATCTGGACAAAAAGACGGAACTTCTCCAGTAATATGCCTATCATGCAGAGGCTCTTCCTGACCCAGTTTACACAGGGCCTAAAAGGGTTAAGGTCTCCAGCCTCTATAGCAGATAAGGTCTTCTGTTCTCTGCCCTACTCGGTGGGCCGGGTGTTGTCCCTTTGGAGCCAGCACGGGCCCTCTTGTACCTTCAAATTGCCAGCTCTTCATTCCACCCCTAGCAAGCAGCAGGGGAGCCTGAACGCCCTGAGCAGCCACACCACCATACCAAATGTGCCTCTTCCAGGCATGGGAGCTGCCCACACCACCAACAGCAGTCACCTGAGGCTAGAGCCTGTGTTTCCTGCCTTGGTGCCAAAGTCTTGCTTGGTAACAGAAGCCGCTGTCAGCACACTGCTGCTCTCTGCCTCTGAGCTCGCAGTTCCTGGCTGTGATGAGCTGGATGGTGTGTCAGCAGCCTGCCCCCGACCACAGAGCAGCCCTGCACAGCAGAAAGAGGCTGAGCCAGAGAAGAGACCAAAGAAAGTCTCACAGATCCGCATCCGGAAAACCATTCCTAAACCAGATCCCAACCTTACCCCAATGGGCCTGCCTCGGCCCAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCATCCGGAAAACCATTCC
59.9
ATTCAGATCCTGCAGCCAGC
60.47
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCTCACAGATCCGCATCCG
60.6
ATTCAGATCCTGCAGCCAGC
60.47
169
PCR template sequence:
CAGAGAAGAGACCAAAGAAAGTCTCACAGATCCGCATCCGGAAAACCATTCCTAAACCAGATCCCAACCTTACCCCAATGGGCCTGCCTCGGCCCAAAAGAGGAGGCCTCTTCTCCAAATTCCCTCATGGAAGAATTGGATACAGTGTCTGAATGTCCCTTATGGAGGGGCTGGCTGCAGGATCTGAATCTTTGGAAAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
54
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(4), mmu-miR-29b-1-5p(3), mmu-miR-106a-5p(2), mmu-miR-206-3p(2), mmu-miR-181a-5p(2), mmu-miR-135a-5p(2), mmu-miR-298-5p(2), mmu-miR-181b-5p(2), mmu-miR-149-5p(2), mmu-miR-136-5p(2), mmu-miR-127-5p(2), mmu-miR-96-5p(2), mmu-miR-224-5p(2), mmu-miR-181d-5p(2), mmu-miR-20b-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-1a-3p(1), mmu-miR-34a-5p(1), mmu-miR-205-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-106b-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-216a-5p(1), mmu-miR-101b-3p(1), mmu-miR-709(1), mmu-miR-320-3p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-128-3p(1), mmu-miR-434-3p(1), mmu-miR-501-3p(1), mmu-miR-199b-3p(1), mmu-miR-182-5p(1), mmu-miR-199a-3p(1), mmu-miR-382-5p(1), mmu-miR-183-5p(1), mmu-miR-297a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-129-5p(1), mmu-miR-673-5p(1), mmu-miR-5101(1), mmu-miR-669d-5p(1), mmu-miR-484(1), mmu-miR-3470b(1), mmu-miR-350-3p(1), mmu-miR-670-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCGGCCCAAAAGAGGAGGCCTCTTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPRR14L_5710_ORF_1
0.7943
0.050634985
1
5595
ORF sequence:
ATGCTGTCATCTGGAGTAGAGACCCAGCCAGTTCCACTTGATTCCTCCATGTCTGCTGTGGTACAGGAATTGTACTCGGAACTCTCAGTAAGTGTCTCCAAAGAGCTTCATGCTGAGCAGGAGCCAAGTAAGATTGCAGATGTAAAGCCTGGAGCCTCACGCTCTCCTCTAAGTCATGGCAGGGCCTCACCCCTGGGGTTGCAGAGGACTCATGCAGAAGGTTGTCGAGAAGAAAGCTCTGAGACCTTGGATTGTCGGGGCAAGAATGGGTGGTGCGGACTAGTGGATCCTACAAGAGATCCTATGGCTTATGAGATCTTGGATAGGGAAGAGAGACCCAAGAGCATGGAGCCAAAGGTCTTCAGAGATCAAGGAGACCAGGCACAAGTTTTCAGAGACCCATGTGAGGGAGCAAAGGAAGACCCGTGCCAACATTCCACAGCTACTAAAGAAAAGATCTGCCCCTGTCAGGATCTCCTCCCGAGACAATCCAGCAAAGGACCTGTGTGTGCAGACCTCCCTGGAGAGCCACAAAACAACGGAGGAAATGTACACAATACAACTGCAGCTCTGCCAGAACTCACAGAAGAGAGACAAGGGACCTGTACTGTTTCCAGAATGAGCAAAGGGAAAGAAGAGTCATGTGACTTAGACCCTGTCTGGGAAGAAGCTGACAATCACCAGCAGAGTCTCAGCCACTGCAAGGAAAAGCACAGTTCAGCACACAATAGCTCCATCACTAAAGGAAGCATAGATACTGTAAAGCCCTCCGAAGAAAATTCTAAAATCTTATATCTCACATCATTTTTGTCTGGTCCAAAATCCTTAGAAAAATGTGGTTTCGAATGTAGTGGATTGATAAAGGCGTGTGCTGAAAAAACCCAGAAGGTTGATCAAATGGAGGACTTCACTTGTGGAGAAGAAAGGGCTGTGGAATCCAGTAACCACAGCAACTGTCACACTGAAGCTGGTTGTCCCTGTACAGACAGCTGTACTTCCATGCGTAATTCTTCTACTGAAGCCACAGAAATTATGTTTAAAAAAACCGATGTGAAAATTACTTTAAACCTTCATGGTAATTTGATAAACTCTGAGGACCATAGAAAAACTGTTGATGTGACCCATCCTGAGAAACGCTCTGAGGAAAGCAGCTTTTCCTTGTTGGTGCATATTGAAGAACCTGAACAAACAACTGTAAAGTCCAGTGCATTAAATGGGAAGATTTACAGTAAAGATGCTACTAAGTCTGTAGTCAGCATCCAGAGGAGTCTGGGTGACTCTCTGCCAAGTACAGCATTGTGCAACAACTTTCTGTTTGAAAGAAAGCCTCCTCAGAGTTTGATGTCAGAAGACCCAGGAAGTTCTGAACATAATGAAATATCAAAACCCAAGAAAGGTACTGCAAAATTACCATCATCTCCAGGAAAACCTGTTCAGACCTCATGTGACAGCATCTCACATTTTGATGAACCCATCACCACCTGTGAGATGAGTAAACGTTCTCCTAACCGAGCCCTGGTTGCACACAAAATAGAGCATGAATGTGTTTCACATCAACAAGTGTCCCTTAGTTCTCAAGACCATGTGACAACTGGCTCTCTAAGTATAAACAGAGAAATGCCTTCAGCAACATGCAGAGATGTTCAAGAGAGCCACCATTCTCTGGAGAATGGAGTAAATGTTACCCCTGATACTCAAACCATTCCTGCTGAGACAAAAATGGAAGCCATGTCTCCACAAGGTGACAGAGCCTGTGGTGCCTCTTCATTCATACAAACCTTAAACAACAAAACAAGAAGCTCAGAAGGGCAAAAAGAAATGACTGCTGTACATTCCACGTTCTTCTCAAGTGTGAGAGGAGCAGCTGCCTCTTCCTTTGTCACAGAGTGTCAAAATGTTCAGTCTCAGGATATCTTCAGCTGTCACTGCATAACACGAGATGCATCTGAAAAGAACATGTGTTCTGCTTCTGCTGCCTGTGAACTGAGAAAAGATTCTCTGAAAGTTAGCAACTGTAAAATCAAATGTGGAAATACATCTCAGGATGGTAATCACTGTTCCCAAAGACCAGAAGGTTTTGTAGAAAAGAGCACCCTCTTGGAGAGTGAACCTGCTGGGAGAGAAGTGCAAAGCAGCTTTCTAGAAGGCAAGGTCAGAAGTGCAGTGGCAGCAGCTGTGACACATACTGCTTCTCTGAACACAGCCACTCACATGGAAACTGGTGATGAAGGACTGCTTGGAAAGAAACAAGATCAACGCATAGACACTGAGATTTATAAACACAGCACCTCTGCCTGTGACACACAAGAACTAAAGCAATCTGCAAACATTCCAAGTCCTGAAACATTAGTGGACCAGTCTCTGAGTATTCTTTCATCTCATTTTAAAACCATGTACCAAGCAGCTGAAAATCTTCACCAGAAAGCAGATGAAGTCTCTGACTGTCAGAGTAACCAAAATATTCTAGACAAGTGCAGATGTGAAGGTAAGCCAGCCGGGGAAGGACTAAATGGTGACTTTGGAGAGACGGACCCTGAGGTCAGCCACAGGCAGAAGGATCTGACAGTCAGCTCAGGCAGTAAAGTCCCTCTGTCTTGTGGTGGTTTAAAGATAAAAGATCCCAAAAGAGCCTTTATAGATATTCCTGGTTCTGAAGAGTTCACACACAGTATGCTAGATGTCATATGTCCAGACTGCACAGATGAGCCTCCAGAGGGAGTGCTGGGTGTGGAAGCATCTAGTCTGTCTGGTCATTGTACAAGGCAAGATACACTGGCATACCACGAGACTATAAGAAGTACCTCATTGCTTCAAGGAGAACTGAATGTTGAATGTCAAGGTACAGAACTCCCAAATGCTGCTGCTTCTTCAGTAGACTCTTCTGAAATACAAAAATCACATGAAGAAAAAGTATGCAACTCTCTAAAAGACTATGAAATGGAAGACTGTCCAGACTCTGCCATTGATCATGAAGTAAAATCTGTTGTAGATCATGAACCAAATATAAGAGCACTGGATAGAGCAGGTGTATCTTTAAATTCCATTCATTGTGAGCATCAAGGTAAAGGAGGATCCATGATAGAAGGGCTGAGACTTGAAGCAAATTCTGAGTTTGGCAAGAGGAAAACCTTTGGATTATCCTTAAAAGACTCAGTGTCTCCTGGGTGCCAAGACTCTGTCAAGATGGTGCACTCTTGTCTGTCTTCTCGGGAACATTCACCAGCTGGTATTTTTGATGAAATGCCTAACTCAAAACATCACTTTAAACCCAAAGATGATGAAATGCTTTGTGAAAATGTCAAGGATTGCACAGTCCTTTCTGACATGAAGGCAGGAATACCAATGGATTTACATAACCCTAGTGAAGGAGATAGCACATACATCAGTGTCAACAAAAAGGTTTGCAAAACTTGTCACTCTCTTAAGAATTCCATTGATAAACATTTGCCTATGACAATGGAAACAGCAATTAGAATGAATAAAGAAGAAACTGAAAAACATCAGACTGGACTACTGGGTCACATACCTGTTGGAAAAGCATCTGAGGAGACCAGAGAAGGTCATGGTGGTAATTCTCAGACCCACTTGAAATGCCAGAGAGTGCAAAATGTTACTGAAGCCCCACAAAACCAGGGACCTGTGGACTCTGCCTTGCCAAAGGAAGCATGTACATATCAAAAGGGCACACATGCACTGCTGGGACAACACTTGTCGTCAGGCACAGTGTCAGATGAGGTGCAGGATAAGCAACCTGTGGCTGACCAAGATGAGTCCATCCTGATAGGAGCAATCACCCTAAGAAAGCCATCCAAGGACAGAATTGCTAGACAGCTTCAGTGGTTGAAATACCCAAAAGAAGAAAGCTTATGTCATTCATTAAAGAAAGACACTGAGTTATGCACAGGTACTTGCCTTCCTGGTGCCTCCTGGAAAGAACATGACCCCAGCTTTGCTGGAGGTGACCGAATACACGGTGCCTTTGTGACTCTGTCACATCAGCACAGATTGCTTTCTGTAAAGAAGCAGCCGCATCGGACATGTAAGAGAATTTCCTGTCAGGAGCCGGTCACTGTGCGGAGAAAAATAAGTAAAGTGAGAAATTCTGATTGTGGAAAGAGTTTCTCTAACCCAATCCCCACAAAAGCACACAGACTTCTCAGCCCATGTACTGTGCCTGCCAAGCCATTGGAACCTGAAACCGTAGCTAGCGAGAACTTGCGCAGCCACATACCAAAGCCGAAGGCTACTCTGTGCCATTCCTTGAGGAGCCGGAGTTGTAGGAAGCCTACCAAAGAATCAGCCTTACTAAGCAAGCTGTCTGTCCTTGCCTCCAGACTGACAACGGCAACAAAGCCCCAGGAACTTAGATGTCGGCGGGATTCCTCTTCCCTTGTTCCATTGGCTAAAAACTACAAGCGCCTCAGATATAAAAAGCTCCTAGATGGATTTTCACATAATGCAATGCAGCTGGACCCATATTTGGCAGCTACTGGGTGGAATAGAGGGTCTAACAGTAGGCCCTTGGCACTTTATTCTCTTGAAGCTGTTAAAATGAGCTTCATAGATTTGAGCAACAAGATGCCATCACTGCTGTTTGGTACGGAAAACGTCCCATTTTCCTTTCATGTGAAATCAGTGTCCAGCTGCATGGCTGAGTCCTCCAGGACTTTTCCTGAGCACTGCGCTCCATCGAGGCTTGCCTTAACAGAGGCCTCCCAGTGCTCAGCTCCAGCTCCCAAGTGGACCTTCTCTTTTTTCTTGTCCCATGGTTGCCCTGGGATGGCCACATTCAGGGAAGACACTGGCCTCAGTAGTCAGACACACACTCAGGCTCCTCTCCAAGAATATGGAGGCACTGCCATAGTTCAGACCAGGGCAGACCGCTCTGGCCTTGGCCTTCACACACTTCTAGCACTTTGTTCACCCGGATGTTACCGAATCTGGACAAAAAGACGGAACTTCTCCAGTAATATGCCTATCATGCAGAGGCTCTTCCTGACCCAGTTTACACAGGGCCTAAAAGGGTTAAGGTCTCCAGCCTCTATAGCAGATAAGGTCTTCTGTTCTCTGCCCTACTCGGTGGGCCGGGTGTTGTCCCTTTGGAGCCAGCACGGGCCCTCTTGTACCTTCAAATTGCCAGCTCTTCATTCCACCCCTAGCAAGCAGCAGGGGAGCCTGAACGCCCTGAGCAGCCACACCACCATACCAAATGTGCCTCTTCCAGGCATGGGAGCTGCCCACACCACCAACAGCAGTCACCTGAGGCTAGAGCCTGTGTTTCCTGCCTTGGTGCCAAAGTCTTGCTTGGTAACAGAAGCCGCTGTCAGCACACTGCTGCTCTCTGCCTCTGAGCTCGCAGTTCCTGGCTGTGATGAGCTGGATGGTGTGTCAGCAGCCTGCCCCCGACCACAGAGCAGCCCTGCACAGCAGAAAGAGGCTGAGCCAGAGAAGAGACCAAAGAAAGTCTCACAGATCCGCATCCGGAAAACCATTCCTAAACCAGATCCCAACCTTACCCCAATGGGCCTGCCTCGGCCCAAAAGAGGAGGCCTCTTCTCCAAATTCCCTCATGGAAGAATTGGATACAGTGTCTGA
Peptide sequence:
MLSSGVETQPVPLDSSMSAVVQELYSELSVSVSKELHAEQEPSKIADVKPGASRSPLSHGRASPLGLQRTHAEGCREESSETLDCRGKNGWCGLVDPTRDPMAYEILDREERPKSMEPKVFRDQGDQAQVFRDPCEGAKEDPCQHSTATKEKICPCQDLLPRQSSKGPVCADLPGEPQNNGGNVHNTTAALPELTEERQGTCTVSRMSKGKEESCDLDPVWEEADNHQQSLSHCKEKHSSAHNSSITKGSIDTVKPSEENSKILYLTSFLSGPKSLEKCGFECSGLIKACAEKTQKVDQMEDFTCGEERAVESSNHSNCHTEAGCPCTDSCTSMRNSSTEATEIMFKKTDVKITLNLHGNLINSEDHRKTVDVTHPEKRSEESSFSLLVHIEEPEQTTVKSSALNGKIYSKDATKSVVSIQRSLGDSLPSTALCNNFLFERKPPQSLMSEDPGSSEHNEISKPKKGTAKLPSSPGKPVQTSCDSISHFDEPITTCEMSKRSPNRALVAHKIEHECVSHQQVSLSSQDHVTTGSLSINREMPSATCRDVQESHHSLENGVNVTPDTQTIPAETKMEAMSPQGDRACGASSFIQTLNNKTRSSEGQKEMTAVHSTFFSSVRGAAASSFVTECQNVQSQDIFSCHCITRDASEKNMCSASAACELRKDSLKVSNCKIKCGNTSQDGNHCSQRPEGFVEKSTLLESEPAGREVQSSFLEGKVRSAVAAAVTHTASLNTATHMETGDEGLLGKKQDQRIDTEIYKHSTSACDTQELKQSANIPSPETLVDQSLSILSSHFKTMYQAAENLHQKADEVSDCQSNQNILDKCRCEGKPAGEGLNGDFGETDPEVSHRQKDLTVSSGSKVPLSCGGLKIKDPKRAFIDIPGSEEFTHSMLDVICPDCTDEPPEGVLGVEASSLSGHCTRQDTLAYHETIRSTSLLQGELNVECQGTELPNAAASSVDSSEIQKSHEEKVCNSLKDYEMEDCPDSAIDHEVKSVVDHEPNIRALDRAGVSLNSIHCEHQGKGGSMIEGLRLEANSEFGKRKTFGLSLKDSVSPGCQDSVKMVHSCLSSREHSPAGIFDEMPNSKHHFKPKDDEMLCENVKDCTVLSDMKAGIPMDLHNPSEGDSTYISVNKKVCKTCHSLKNSIDKHLPMTMETAIRMNKEETEKHQTGLLGHIPVGKASEETREGHGGNSQTHLKCQRVQNVTEAPQNQGPVDSALPKEACTYQKGTHALLGQHLSSGTVSDEVQDKQPVADQDESILIGAITLRKPSKDRIARQLQWLKYPKEESLCHSLKKDTELCTGTCLPGASWKEHDPSFAGGDRIHGAFVTLSHQHRLLSVKKQPHRTCKRISCQEPVTVRRKISKVRNSDCGKSFSNPIPTKAHRLLSPCTVPAKPLEPETVASENLRSHIPKPKATLCHSLRSRSCRKPTKESALLSKLSVLASRLTTATKPQELRCRRDSSSLVPLAKNYKRLRYKKLLDGFSHNAMQLDPYLAATGWNRGSNSRPLALYSLEAVKMSFIDLSNKMPSLLFGTENVPFSFHVKSVSSCMAESSRTFPEHCAPSRLALTEASQCSAPAPKWTFSFFLSHGCPGMATFREDTGLSSQTHTQAPLQEYGGTAIVQTRADRSGLGLHTLLALCSPGCYRIWTKRRNFSSNMPIMQRLFLTQFTQGLKGLRSPASIADKVFCSLPYSVGRVLSLWSQHGPSCTFKLPALHSTPSKQQGSLNALSSHTTIPNVPLPGMGAAHTTNSSHLRLEPVFPALVPKSCLVTEAAVSTLLLSASELAVPGCDELDGVSAACPRPQSSPAQQKEAEPEKRPKKVSQIRIRKTIPKPDPNLTPMGLPRPKRGGLFSKFPHGRIGYSV
IRESfinder result
IRESfinder score
0.609783451
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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