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mmu_circPrr14l_54
Basic information of circular RNA
PanCircBase ID:
mmu_circPrr14l_54
mm39_Chr. Position ID:
chr5|32989148|32989202|-
Gene name:
Prr14l
Transcript:
ENSMUST00000120129.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
54
Exon/intron sizes in nt:
54
Flanking exon/introns:
chr5:32988895-32989148|chr5:32989202-32992959
Splice length:
54
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAAATGTACACAATACAACTGCAGCTCTGCCAGAACTCACAGAAGAGAGACAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TGCCAGAACTCACAGAAGAGAGACAAGGAAATGTACACAATACAACTGCAGCTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GAAGAGAGACAAGGAAATGTACACAA
siRNA sets
TACATTTCCTTGTCTCTCT, CATTTCCTTGTCTCTCTTC, TTGTGTACATTTCCTTGTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPRR14L_54_ORF_1
1.1284
0.211674081
0.178864332
105
ORF sequence:
ATGTACACAATACAACTGCAGCTCTGCCAGAACTCACAGAAGAGAGACAAGGAAATGTACACAATACAACTGCAGCTCTGCCAGAACTCACAGAAGAGAGACAAG
Peptide sequence:
MYTIQLQLCQNSQKRDKEMYTIQLQLCQNSQKRDK
IRESfinder result
IRESfinder score
0.618359643
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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