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mmu_circPrmt3_826

Basic information of circular RNA
PanCircBase ID:

mmu_circPrmt3_826

mm39_Chr. Position ID:

chr7|49430056|49456374|+

Gene name:

Prmt3

Transcript:

ENSMUST00000032715.13

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

8

Exon/intron indexes:

3,4,5,6,7,8,9,10

Exon/intron offsets:

0,812,1633,5758,6924,11664,17997,26218

Genomic length:

26318

Exon/intron sizes in nt:

83,50,10,31,60,14,26,60,00,000

Flanking exon/introns:

chr7:49428461-49430056|chr7:49456374-49467779

Splice length:

826

Other database IDs:

circAtlas: hsa-PRMT3_0028

Human Ortholog IDs:
Mature spliced Sequence:

GTTGTTCGCCTCTGCTGAGGAAACGTTTTCACACTGTAAGTTGGAGCATCAATTTAATATTGATAGTATGGTCCATAAACATGGACTTGAATTTTATGGATACATTAAACTAATAAATTTTATTAGACTTAAGAATCCTACGGTTGAATATATGAATTCCATATATAACCCTGTGCCTTGGGAAAAAGATGAGTACCTGAAGCCAGTGTTGGAAGATGACCTTTTGCTTCAGTTTGATGTAGAAGATCTTTATGAGCCTGTGTCTACTCCATTCTCATACCCCAATGGACTCAGTGAAAGCGCATCTGTTGTTGAGAAGTTGAAGCACATGGAAGCGCGGGCGCTGTCTGCTGAGGCTGCCTTGGCTCGGGCGCGTGAGGATCTGCAGAAGATGAAACAATTTGCTCAGGACTTTGTGATGAACGTAGATGTCAGAACCTGCTCCTCCACGACGACCATTGCAGACCTGCAGGAGGATGAGGATGGCGTCTACTTCAGCTCCTATGGGCATTATGGGATACATGAAGAAATGCTAAAGGACAAAGTACGCACAGAAAGTTACAGAGATTTCATATACCAAAATCCACACATCTTCAAAGATAAGGTTGTTCTGGATGTTGGGTGTGGAACTGGAATTCTCTCCATGTTTGCTGCCAAAGTTGGGGCAAAGAAAGTGATTGCAGTCGACCAGTCTGAAATCCTCTACCAGGCTATGGATATCATAAGACTAAATAAACTTGAAGATACCATTGTACTAATTAAAGGAAAGATTGAAGAAGTGAGTCTTCCTGTGGAAAAGGTGGATGTTATTATATCAGAGTGGATG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TCCTGTGGAAAAGGTGGATGT

59.22

TCCATAAAATTCAAGTCCATGTTT

55.24

140

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TCTTCCTGTGGAAAAGGTGGA

58.87

TCCATAAAATTCAAGTCCATGTTT

55.24

143

PCR template sequence:

ACTAAATAAACTTGAAGATACCATTGTACTAATTAAAGGAAAGATTGAAGAAGTGAGTCTTCCTGTGGAAAAGGTGGATGTTATTATATCAGAGTGGATGGTTGTTCGCCTCTGCTGAGGAAACGTTTTCACACTGTAAGTTGGAGCATCAATTTAATATTGATAGTATGGTCCATAAACATGGACTTGAATTTTATGGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

11

Interacting miRNAs (#binding sites)

mmu-miR-124-3p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-7b-5p(1), mmu-miR-7a-5p(1), mmu-miR-185-5p(1), mmu-miR-301b-3p(1), mmu-miR-218-5p(1), mmu-miR-301a-3p(1), mmu-miR-1187(1), mmu-miR-350-3p(1)

siRNAs for circular RNA silencing
Junction sequence

ATCAGAGTGGATGGTTGTTCGCCTCT

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCPRMT3_826_ORF_1

1.0382

0.136498235

0.9655673

849

ORF sequence:

ATGTTATTATATCAGAGTGGATGGTTGTTCGCCTCTGCTGAGGAAACGTTTTCACACTGTAAGTTGGAGCATCAATTTAATATTGATAGTATGGTCCATAAACATGGACTTGAATTTTATGGATACATTAAACTAATAAATTTTATTAGACTTAAGAATCCTACGGTTGAATATATGAATTCCATATATAACCCTGTGCCTTGGGAAAAAGATGAGTACCTGAAGCCAGTGTTGGAAGATGACCTTTTGCTTCAGTTTGATGTAGAAGATCTTTATGAGCCTGTGTCTACTCCATTCTCATACCCCAATGGACTCAGTGAAAGCGCATCTGTTGTTGAGAAGTTGAAGCACATGGAAGCGCGGGCGCTGTCTGCTGAGGCTGCCTTGGCTCGGGCGCGTGAGGATCTGCAGAAGATGAAACAATTTGCTCAGGACTTTGTGATGAACGTAGATGTCAGAACCTGCTCCTCCACGACGACCATTGCAGACCTGCAGGAGGATGAGGATGGCGTCTACTTCAGCTCCTATGGGCATTATGGGATACATGAAGAAATGCTAAAGGACAAAGTACGCACAGAAAGTTACAGAGATTTCATATACCAAAATCCACACATCTTCAAAGATAAGGTTGTTCTGGATGTTGGGTGTGGAACTGGAATTCTCTCCATGTTTGCTGCCAAAGTTGGGGCAAAGAAAGTGATTGCAGTCGACCAGTCTGAAATCCTCTACCAGGCTATGGATATCATAAGACTAAATAAACTTGAAGATACCATTGTACTAATTAAAGGAAAGATTGAAGAAGTGAGTCTTCCTGTGGAAAAGGTGGATGTTATTATATCAGAGTGGATG

Peptide sequence:

MLLYQSGWLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYGYIKLINFIRLKNPTVEYMNSIYNPVPWEKDEYLKPVLEDDLLLQFDVEDLYEPVSTPFSYPNGLSESASVVEKLKHMEARALSAEAALARAREDLQKMKQFAQDFVMNVDVRTCSSTTTIADLQEDEDGVYFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKVGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWM

IRESfinder result

IRESfinder score

0.524178268

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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