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mmu_circPpp6r3_1638
Basic information of circular RNA
PanCircBase ID:
mmu_circPpp6r3_1638
mm39_Chr. Position ID:
chr19|3528277|3576934|-
Gene name:
Ppp6r3
Transcript:
ENSMUST00000113997.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
15,14,13,12,11,10,9,8,7,6,5,4,3
Exon/intron offsets:
0,6553,8698,12496,14088,15608,18244,28964,33651,36376,39967,43456,48424
Genomic length:
48657
Exon/intron sizes in nt:
87,86,11,66,51,50,15,30,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr19:3523866-3528277|chr19:3576934-3594107
Splice length:
1638
Other database IDs:
circAtlas: mmu-Ppp6r3_0024
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_370375
Human Ortholog IDs:
Mature spliced Sequence:
AACAGCATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCTAGAGAGAGAAGATGTGACACTGAAGGAGCTAATGGATGAGGAGGATGTTCTACAGGAGTGTAAAGCACAGAACCGCAAGCTCATAGAATTTCTGTTAAAAGCAGAATGTCTGGAAGATTTAGTCTCATTCATTATAGAAGAACCACCTCAAGATATGGATGAGAAGATCCGATACAAGTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATTGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGATCGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAAGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAACGTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAGAAAAGTGTGATGAAGACTACATGGGGTATATTGGACCCACCTGTGGGGAATACTCGATTAAATGTCATTAGGTTGATATCCAGCCTGCTCCAAACCAATACCAGCAGCATAAATGGAGACCTGATGGAACTGAACAGCATTGGCGTCATATTGGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCATCTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACAGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAGATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTAGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACGGTAGATCTAGTTACAACCTGC
59.9
AGCGTGTCTATGTGGGATGA
58.51
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACGGTAGATCTAGTTACAACCTGC
59.9
AGAAGCGTGTCTATGTGGGA
58.44
155
PCR template sequence:
CACGGTAGATCTAGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAAAACAGCATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCTAGAGAGAGAAGATGTGACACTGAAGGAGCTAATGGATGAGGAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-32-5p(1), mmu-miR-375-3p(1), mmu-miR-92a-3p(1), mmu-miR-335-5p(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-340-5p(1), mmu-miR-802-5p(1), mmu-miR-190b-5p(1), mmu-miR-670-5p(1), mmu-miR-544-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCTTTACAGCAAAACAGCATGTTTT
siRNA sets
ATGCTGTTTTGCTGTAAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPPP6R3_1638_ORF_1
1.0035
0.131127543
0.999999999
3270
ORF sequence:
ATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCTAGAGAGAGAAGATGTGACACTGAAGGAGCTAATGGATGAGGAGGATGTTCTACAGGAGTGTAAAGCACAGAACCGCAAGCTCATAGAATTTCTGTTAAAAGCAGAATGTCTGGAAGATTTAGTCTCATTCATTATAGAAGAACCACCTCAAGATATGGATGAGAAGATCCGATACAAGTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATTGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGATCGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAAGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAACGTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAGAAAAGTGTGATGAAGACTACATGGGGTATATTGGACCCACCTGTGGGGAATACTCGATTAAATGTCATTAGGTTGATATCCAGCCTGCTCCAAACCAATACCAGCAGCATAAATGGAGACCTGATGGAACTGAACAGCATTGGCGTCATATTGGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCATCTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACAGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAGATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTAGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAAAACAGCATGTTTTGGAAATTTGATCTTCACTCATCATCCCACATAGACACGCTTCTAGAGAGAGAAGATGTGACACTGAAGGAGCTAATGGATGAGGAGGATGTTCTACAGGAGTGTAAAGCACAGAACCGCAAGCTCATAGAATTTCTGTTAAAAGCAGAATGTCTGGAAGATTTAGTCTCATTCATTATAGAAGAACCACCTCAAGATATGGATGAGAAGATCCGATACAAGTATCCAAATATATCTTGTGAGTTGCTCACATCTGATGTCTCCCAGATGAATGATAGACTGGGGGAAGATGAGTCCTTGCTAATGAAATTGTATAGCTTCCTCCTAAATGAGTCCCCCTTGAACCCACTACTCGCCAGTTTCTTCAGCAAGGTGCTAAGTATTCTTATCAGCAGAAAACCAGAACAGATTGTGGATTTCTTGAAAAAGAAGCGTGATTTTGTGGATCTCATTATAAAGCACATAGGAACTTCTGCTATCATGGATTTATTGCTCAGGCTCTTGACATGTATTGAGCCTCCACAACCCAGGCAAGATGTTCTGAATTGGCTAAATGAGGAGAGGATTATCCAGAGGCTTGTGGAAATAGTTCACCCATCGCAAGAAGAAGATCGGCATTCAAATGCCTCACAATCACTTTGTGAAATTGTTCGCCTGAGCAGAGACCAGATGTTACAAGTTCAGAACAGTACAGAGCCAGACCCCCTGCTTGCCACTCTAGAAAAGCAAGAAATTATTGAGCAGCTTCTGTCAAATATTTTTCACAAGGAGAAGAATGAATCGGCCATAGTCAGTGCAATTCAGATTTTGCTGACTTTGCTTGAGACTCGACGGCCAACGTTTGAAGGCCATATAGAAATCTGCCCCCCGGGCATGAGTCATTCAGCTTGTTCAGTTAACAAGAGTGTTCTTGAAGCCATCCGAGGAAGACTTGGATCTTTCCATGAACTCCTACTCGAGCCACCCAAGAAAAGTGTGATGAAGACTACATGGGGTATATTGGACCCACCTGTGGGGAATACTCGATTAAATGTCATTAGGTTGATATCCAGCCTGCTCCAAACCAATACCAGCAGCATAAATGGAGACCTGATGGAACTGAACAGCATTGGCGTCATATTGGATATGTTCTTCAAGTACACATGGAATAACTTTCTACACACGCAAGTGGAAATTTGCATTGCTCTCATTCTGGCCAGTCCTTTTGAGAATGCAGAGAATGGCACAATTACTGATCAAGACTCCACTGGTGACAATTTGTTATTGAAGCATCTTTTTCAAAAGTGTCAGTTAATAGAGCGAATACTTGAAGCCTGGGACACAAATGAGAAGAAACAGGCTGAAGGAGGACGACGGCATGGTTACATGGGACACCTTACGAGGATAGCTAACTGTATTGTGCACAGCACTGACAAGGGTCCGAACAGTGCGTTAGTACAGCAGCTCATCAAAGATCTTCCCGATGAAGTCAGGGAGCGGTGGGAGACGTTCTGCACGAACTCCTTAGGAGAGACGAACAAGAGGAACACGGTAGATCTAGTTACAACCTGCCATATTCATTCATCCAGTGATGATGAAATTGACTTTAAAGACACGGGTTTCTCACAGGATTCCTCTTTACAGCAA
Peptide sequence:
MFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSTGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQNSMFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIEFLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKLYSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLLRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALILASPFENAENGTITDQDSTGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKDLPDEVRERWETFCTNSLGETNKRNTVDLVTTCHIHSSSDDEIDFKDTGFSQDSSLQQ
IRESfinder result
IRESfinder score
0.64784673
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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