top of page
mmu_circPpp2r2a_75
Basic information of circular RNA
PanCircBase ID:
mmu_circPpp2r2a_75
mm39_Chr. Position ID:
chr14|67307683|67307758|-
Gene name:
Ppp2r2a
Transcript:
ENSMUST00000089230.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
75
Exon/intron sizes in nt:
75
Flanking exon/introns:
chr14:67276421-67307683|chr14:67307758-67309538
Splice length:
75
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAGCTGGAGGAGGGAATGATATTCAGTGGTGTTTTTCTCAGGTGAAAGGAGCAGTAGATGATGACGTAGCAGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAGGTGAAAGGAGCAGTAGATGA
59.8
TGAATATCATTCCCTCCTCCAGC
59.67
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGGTGAAAGGAGCAGTAGA
56.57
TGAATATCATTCCCTCCTCCAGC
59.67
62
PCR template sequence:
CAGGTGAAAGGAGCAGTAGATGATGACGTAGCAGAAGGAGCTGGAGGAGGGAATGATATTCAGTGGTGTTTTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-29b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACGTAGCAGAAGGAGCTGGAGGAGG
siRNA sets
CTCCTCCAGCTCCTTCTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.199115684
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page