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mmu_circPor_192
Basic information of circular RNA
PanCircBase ID:
mmu_circPor_192
mm39_Chr. Position ID:
chr5|135744725|135744917|+
Gene name:
Por
Transcript:
ENSMUST00000153500.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
192
Exon/intron sizes in nt:
192
Flanking exon/introns:
chr5:135698970-135744725|chr5:135744917-135757515
Splice length:
192
Other database IDs:
CIRCpedia: MMU_CIRCpedia_39666, circAtlas: mmu-Por_0001
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_58936
Human Ortholog IDs:
Mature spliced Sequence:
TTGTGTCACCAACATGGGGGACTCTCACGAAGACACCAGTGCCACAGTGCCTGAGGCAGTGGCTGAAGAAGTGTCTCTATTCAGCACAACGGACATTGTTCTGTTTTCTCTCATCGTGGGGGTCCTGACCTACTGGTTCATCTTTAAAAAGAAGAAAGAAGAGATACCGGAGTTCAGCAAGATCCAGACAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTTCTCTCATCGTGGGGGTC
59.1
GCACTGGTGTCTTCGTGAGA
59.97
130
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTTCTCTCATCGTGGGGGTC
59.1
TTCTTCAGCCACTGCCTCAG
59.96
158
PCR template sequence:
TGTTCTGTTTTCTCTCATCGTGGGGGTCCTGACCTACTGGTTCATCTTTAAAAAGAAGAAAGAAGAGATACCGGAGTTCAGCAAGATCCAGACAACTTGTGTCACCAACATGGGGGACTCTCACGAAGACACCAGTGCCACAGTGCCTGAGGCAGTGGCTGAAGAAGTGTCTCTATTCAGCACAACGGACAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-324-3p(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
AGATCCAGACAACTTGTGTCACCAAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPOR_192_ORF_1
1.2938
0.377361642
0.795697445
369
ORF sequence:
ATGGGGGACTCTCACGAAGACACCAGTGCCACAGTGCCTGAGGCAGTGGCTGAAGAAGTGTCTCTATTCAGCACAACGGACATTGTTCTGTTTTCTCTCATCGTGGGGGTCCTGACCTACTGGTTCATCTTTAAAAAGAAGAAAGAAGAGATACCGGAGTTCAGCAAGATCCAGACAACTTGTGTCACCAACATGGGGGACTCTCACGAAGACACCAGTGCCACAGTGCCTGAGGCAGTGGCTGAAGAAGTGTCTCTATTCAGCACAACGGACATTGTTCTGTTTTCTCTCATCGTGGGGGTCCTGACCTACTGGTTCATCTTTAAAAAGAAGAAAGAAGAGATACCGGAGTTCAGCAAGATCCAGACA
Peptide sequence:
MGDSHEDTSATVPEAVAEEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTTCVTNMGDSHEDTSATVPEAVAEEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQT
IRESfinder result
IRESfinder score
0.874073013
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
RPF, cORF, m6A
mmu_circPor_001
Evidence
Peptide sequence:
MGDSHEDTSATVPEAVAEEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTTCVTNMGDSHEDTSATVPEAVAEEVSLFSTTDIVLFSLIVGVLTYWFIFKKKKEEIPEFSKIQTTCVTN
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