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mmu_circPlcg1_102
Basic information of circular RNA
PanCircBase ID:
mmu_circPlcg1_102
mm39_Chr. Position ID:
chr2|160595562|160595664|+
Gene name:
Plcg1
Transcript:
ENSMUST00000151590.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
102
Exon/intron sizes in nt:
102
Flanking exon/introns:
chr2:160595489-160595562|chr2:160595664-160595743
Splice length:
102
Other database IDs:
circBase: mmu_circ_0009531, CIRCpedia: MMU_CIRCpedia_11135
CIRCpedia: HSA_CIRCpedia_34225
Human Ortholog IDs:
Mature spliced Sequence:
GAGTGGTATCCCCACTACTTCGTTCTGACTAGCAGCAAGATCTACTACTCTGAGGAGACCAGCAGTGACCAGGGCAATGAGGATGAAGAGGAGCCGAAGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGGAGACCAGCAGTGACCA
61.19
ATACCACTCCTCCTTCGGCT
60.03
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGAGACCAGCAGTGACCA
60.15
GATACCACTCCTCCTTCGGC
59.61
60
PCR template sequence:
GAGGAGACCAGCAGTGACCAGGGCAATGAGGATGAAGAGGAGCCGAAGGAGGAGTGGTATCCCCACTACTTCGTTCTGACTAGCAGCAAGATCTACTACTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GGAGCCGAAGGAGGAGTGGTATCCCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.524590293
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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