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mmu_circPlcb4_115

Basic information of circular RNA
PanCircBase ID:

mmu_circPlcb4_115

mm39_Chr. Position ID:

chr2|135583749|135647525|+

Gene name:

Plcb4

Transcript:

ENSMUST00000137969.8

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

2

Exon/intron indexes:

1,2

Exon/intron offsets:

0,63719

Genomic length:

63776

Exon/intron sizes in nt:

58,57

Flanking exon/introns:

None|chr2:135647525-135719302

Splice length:

115

Other database IDs:

circAtlas: mmu-Plcb4_0031

Human Ortholog IDs:
Mature spliced Sequence:

GAGCCTGCTTTGTGCGTGCTGTCAACTACCTGGGAGGATTCTCGACACAGCAGCCTGGGGACTGTGCAGGATTTGATCGGGTAGACCTCCCTTGCTTGCTGCTCCCAGCTGCCTG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GGGTAGACCTCCCTTGCTTG

59.75

TGTCGAGAATCCTCCCAGGT

59.96

84

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GGGTAGACCTCCCTTGCTTG

59.75

GCTGCTGTGTCGAGAATCCT

60.11

91

PCR template sequence:

GGACTGTGCAGGATTTGATCGGGTAGACCTCCCTTGCTTGCTGCTCCCAGCTGCCTGGAGCCTGCTTTGTGCGTGCTGTCAACTACCTGGGAGGATTCTCGACACAGCAGCCTG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

4

Interacting miRNAs (#binding sites)

mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-15b-5p(1), mmu-miR-214-3p(1)

siRNAs for circular RNA silencing
Junction sequence

TCCCAGCTGCCTGGAGCCTGCTTTGT

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.817016153

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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