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mmu_circPkhd1_5297
Basic information of circular RNA
PanCircBase ID:
mmu_circPkhd1_5297
mm39_Chr. Position ID:
chr1|20573165|20658787|-
Gene name:
Pkhd1
Transcript:
ENSMUST00000088448.12
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
29
Exon/intron indexes:
35,34,33,32,31,30,29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7
Exon/intron offsets:
0,5951,17212,19722,30901,31594,34331,37372,44327,45149,46744,47905,50527,52136,55646,56479,59418,60681,60859,62657,63816,64506,66887,68397,81118,82216,82705,83882,85543
Genomic length:
85622
Exon/intron sizes in nt:
151,220,144,1602,68,196,136,131,276,106,123,185,128,139,176,128,143,91,90,279,115,142,96,102,71,40,65,75,79
Flanking exon/introns:
chr1:20520601-20573165|chr1:20658787-20664134
Splice length:
5297
Other database IDs:
circAtlas: mmu-Pkhd1_0092
circBase: hsa_circ_0076725
Human Ortholog IDs:
Mature spliced Sequence:
GAGAAGTAGTGTCCGTGTACGGCCGGGTCATCACTACCTGGCTGGAGACCTTCGATCCTGATGTGGACTACATAGAGAGCCCATTGATCCTAGAAGCTAGAGAAGACAAATGGCTTACTCCCTGTTCCCTTATAAACAGGCAGACAGGAAGCTGTTTTCCCATCCAGGAGGAGCATGGCCTTGGGAATGTGCAGTGTCGTGTGGAAGGCGATTATATTGGTTCTCAGAATGTTAGTTTTTCAGTATTTAACAAGGGGAGGTCGATGGTGCATAAGGAAGCCTGGCTCATCAGTGCTAAACAGGAACTGTTCCTGTACCAGACATACCCAGAAATCTTATCCGTGTTTCCAAAAGTTGGGAGCCTTGGGGGAAGAACGGACATCATCATTACGGGAGATTTCTTTGACCCTTCTGCCCGGGTTACCATTGCAGGCATCCCATGTGATATTAGATATGTGTCTCCCAGGAAGATTGAGTGCACTACCAGGGCTCCAGGAAATGAAGCAAGGCTCACTGCTCCTCAGGCAGGCAATCGAGGACTCCGTTTTGAAGTTGGAGATGCTACTAAGGATGTGGAGCTGACTGAAGCCACCCCAGGGTACAGGTGGCAGATAGTTCCTAATGCCAGTTCTCCATCTGGCTTTTGGTCAAAGGAAGGGAGACCTTTCAGAGCACGGCTCAGTGGGTTCTTCGTGGCGCCACAGACAAACAATTACACATTCTGGATCCAGGCAGACAGCCAAGCTTCCTTGTGTTTCAGTTCTTCAGAGGAGCCAAGGACCAAGGTAGAAGTGGCCTCTGTTGGGGTTGGCACTGCTGACTGGTTTGACTCTTGGGAGCAGATCGGGAATGAAGGGAGCTGGCACCAGAAGACAACCAAGCTAGAACTGCAGGGCGGAGCCAAGTACTACTTGGAAGCAGAGCAACATGGGATAGCTCCCAGCAGAGGGATGAGAATTGGTGTCCAGATCCACAACACCTGGTTGAATCCAGATGTGGTCAACACTTACCTTCTGGAGAAACACCAGATCCGAGCTCGAGCCCAGAGACTTCCAGAAATACAGGTGTTGCATGTGTCAGGTAAAGGAAACTTTTTCCTTACTTGGGGCAATGTCTCCAGCCAACCAGTTCCTGCAAATGCCACAGCCCAACAGATCCAAACCACCATTGAAGAGTTGCTTGTGGTGAAATGCAATCTGGCACCGTTTTCGGCCCATGTTCTTCTCCGGCTTGGATTTGAGCAAGGTTTAGAAGGCTCCAGGTCTGATGGGGTCCGCACCAGTTCAACTGAACCCTTCTGTGGCAGATTCAGCCTTGGTCAACTTGGACATCTTATCCTAATTCCAGAGGCTGCCGACAAGGGCTATCAGCTGGATCGATACCCGTATCTGTGCCTTGCGTACAGAGGCCATATGAACAAGACCCTGGACATGACTGTTTCTTTCCTCTTTGGCTTCCAAACTATCATGAAGAATATCACCTGTGATTGGAGTCTTACCGATCCCCACCCTGAGAGCTGGCAGTTCACTTGCATTAACCTCTGGGACACATGTCTATGTCACTCTGAGGATATCCAGTCTTCTCTGGCAAACACCCCATTGCTGGCTCATCGGATTGACATCCGCCCCGTGGTTCCGGAGGCAGGCCTGCTCTATGTGGATGAAATTATTCTTGCAGATACCAACGTAACAGTTTCTCAAGCTGATTCTGGAAGAGCCTGCCCAGGTGGGAATGTGGTGGAGTCAGTATCGGTGGTGGGAGTCCCTCCGGTCTACAGCATAAGCTCCTGGTTGGCAGGATGTGGCTCAGAGCTCCCTCTCATCACTGCATGCTCTGTGTCCACGGAGGGAACAGGAGATGGATCTGAATTGATTGAGGTGACAGCTCAAAGACTCCAGAGGACAAGCCCACCTTTGGGAGGACACTTCTTCCTTTACCTCTCTGACACAGTGATACCTGATGTTCCGGTGCGCATGTCTGCCCGACAGCTGCATAAGCTACTGCAGGACAGTGCTGATGAGTCCACATCTGGATATCTCAATGCCGGTGACTTCACTGTGACAGAGGATCTGAATTCCTGCTATGAACATGTGTGGACTCTTTCTTGGACCACTCAGACTGGGGATTTGCCCAATTTTATCAGGGTCTCTGATCAAAATCTTACTGGGGTGAATCCCACTGTAACTGCTCGCGTGGTATATGATGGTGGAGTTTTCCTTGGACCCATCTTTGGAGACATGTTGGCTACTGCCAACCAGCAAACTCAGGTGGCTGTACAGGTGAATGACATACCAGCCTATTGTTCAGGCTCCTGTTCTTTCCAATACCAGCAAGAGTCAACTCCCAGTGTGGATCATGTGTGGTACTCCCTTGGAAGCGATGTCAACTTGCTGGTTCATTTTACTGGAACTGGTTTCCCTAGAGACACCCAGTTCTTACAGGTCACGGTGAACAAAACTAGCTGTGAAGTTCTTTTCTCAAATGAAACCAATGTGGCCTGTGAGCTGGCTCTGCTACCAGTTGGAGTGCACCAGATTTTTATGCTGGTGATACCGTCAGGCCTTGCTGTTCATGCCAGTGGAGAAGACCTCCTCCTGCATGTGGAACCCAGGCTGGATGCTGTGGAGCCTTCTACAGCTGCAGAGATTGGAGGACGGTGGGTTACTCTCCGAGGCTCTAGTTTGGAAGGTGTTAGCCTGGTGTTATTTGGAACTCAGTCATGTGTCATTGATGCCATTAGAAGCAATTCACAACAAATTCAATGCAAAGTCCCACCTAGGGGGAAAGATGGATACACTGTGAATGTGACTGTGATCAGTGGCGACCACTCTACAGTTCTTGCCAGAGCATTTACATATGTCTCCTCTTTAAATCCAGTGATTGTGTCATTGAGCAGAAACAGAAGCAGCATAGCAGGAGGTGAGATTCTGTTCCTTGGGATGTCACTGCTGGTGAACTACACAGATCTGGATGTGCAAATCCATGTGCAGGATACTTCTGCTCAGGTCCTTTCACAGACAGCGTGGGGACTGGAGGTAGTGTTGCCTCCACTAGTACCTGGCATCCATGTGATTTCAGCATTCATCAATGGAGTCAGTATTCGTTCACAAGGGGTTGATCTCTATATCCAGTACCTCACTGAAGTTTTCAGCGTGGAACCTTGCTCTGGGTCTCTCTTGGGTGGAACTCTCCTCAGTCTCTTAGGAACAGGACTGGGCAGAGACCCAGCTCTGATTCGGGTGCTTGTGGACAATCATCCTTGTGATATTGTGAACTTAACGGAAGTGAACATTTGGTGTGAGACTCCTCCAGCTGTACTACCACCCAGGGCAGATGTTCTCACTGTCCTAGCCTCTGTGGAGATCTGGGCTGGCAACACTTCCTTCTTCCATGGACCAAGCTTGGTGGGGAAGGGCTTTACCTTCACATATGAAGCAGCAGCAACACCAGTGGTCACTGCTATGTGGGGAGAATTCAGGAACAACAGTGTGAGGTTTTATGTGGAAGGAAGTAACATCTCTGACTCAGTCATTCTTTTGGGGTCCTTGAAATGTGAACTTGAAGTACAATTTTTTGGTGATAGCATGAACTTGTCTGGGTGCTTTTTTCCTCTCCATAGTTTGGAAGCCGGGGTCTATACTCTCCAAGTTCGTCACAAGAGGATGGGGTTTGCCAATATGTCTGTGGTGCCTCAGAAATTTGAGTTGTCACCTCAGATTATTGCCATCTTCCCAACACATGGGTCTAAATGTGGTGGGACAGTACTTACTGTGAAGGGCATGGCCTTCAGTTCCAGAAAGAGGTCAGTTCATGTTGACATTTCAGGCCCTTTTGCTTGCATGATTTTGAGTTTGGAAGACCACACAGTCCTATGCCAGACCAGATTTGTGGGTGACCAATTTTCTGAAGCATCACTGGCTCTAAACATCACAGTTCTGGTCAATGGGCTGACCAGCAAGTGTAAGGGGAACTGTACACTCTTCATAGAGGAAGCAGCAACTCCTATTGTGGATGCTTTGACTATAAGCATCAGTGGGTCTCTAACCATGGTGCTGATGAGAGGCCGGAGGTTAGCTACCACTGCTGATGAGCCAATAGCATTTGTGGATGATCAACTTCCCTGCCACACAACATTCTTCAATACCAGCCATGTGGCATGCCAGATAAGAGATTTGGCCCCAGGCTTCCACTATCTGTCAGCTGTTCATACAAGTGCTGGATATGCTTGCCTCAATAGTGTTTCTAGAAACTTCTTCATCGTGCCTCAGGTGCTTGATTATTTTCCTAAGGACTTTAGCATCCATGGTGGAAGTCTCTTGACGATAAAAGGCACAGCCCTGCGAGGATGGAAAGCTACAGTTGTCTATGTTGGCCGGCAGGCTTGTCTAACAGTGAACTTCAGCTCTGACTTCATCCAGTGCATTGTTCCTGCAGGAAATGGCTCTGCTGCTCTGGAAATTGATGTGAATGGAGTTTTATACCACATAGGACTTGTTGATTACAGCAGTATCTTCACCCCAGAATTGCTTTCTGTTTCACGGAGCCAAGACATCTTAACCTTTACAGTGGCCCGGATCTCAGGGGCTGCAAATGTTGACATTTTTATTGGGACATCACCGTGTCTAGGTGTTGCTGGCAACCGTACAGTTCTCCAGTGCATGGTCCCTCTGCTTCCTGCTGGGGAGTATCTTGTCACAGGTTATGATCACAGCCGAGGGTGGGCCTCATCCACTCTCATTCTTGTGCTGAGAGCCACTGTGACCTCAGTGACCAAGAACTATGGTTGCCTGGGTGGAAGGCTTTTGCATGTGCTCGGAGCAGGATTTTCTCCAGGGAACATCTCAGCTGCCGTATGTGGTGCTCCATGCCAAGTCTTGGCTAATGCGACAGTGTCTGCCTTCAGCTGCTTGGTTCTGCCCCTGCATGTGTCCTTGGCTTTCCTATGTGACCTGAGGCATGCAGAAGACAGCTGTAAAGTCAGGAGCTCCACCTACTTGCGATGTGATTTGACTGTCTCCATGGGGACAGAGAGACTGCCTGGATCCTGGCCTTATGTCTACCTTTGTGAAGAGAGTTCCCTGTGCCTCTTCGAACCAGATCACTGGACAGAGTCAGTCTTTCCATCGTTCTCAGGCCTCTTCCTCAGCCCTAAAGTGGAAAGAGATGAAGTTCTCATCTATAATAGCTCCTGTAACATTACCATGGAAACTGAGGCAGAGATGGAGTGTGAGATGCCTAATCAGCCAATTACCGCCAAGATTACTGAAATACAGAAAAGCTGGGGCCAGAACACTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGGCAGAGATGGAGTGTG
59.1
GATCGAAGGTCTCCAGCCAG
59.9
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGGCAGAGATGGAGTGTG
59.1
CAGGATCGAAGGTCTCCAGC
59.9
148
PCR template sequence:
TACCATGGAAACTGAGGCAGAGATGGAGTGTGAGATGCCTAATCAGCCAATTACCGCCAAGATTACTGAAATACAGAAAAGCTGGGGCCAGAACACTCAGGAGAAGTAGTGTCCGTGTACGGCCGGGTCATCACTACCTGGCTGGAGACCTTCGATCCTGATGTGGACTACATAGAGAGCCCATTGATCCTAGAAGCTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
45
Interacting miRNAs (#binding sites)
mmu-miR-27a-3p(3), mmu-miR-23b-3p(2), mmu-miR-27b-3p(2), mmu-miR-150-5p(2), mmu-miR-326-3p(2), mmu-miR-23a-3p(2), mmu-miR-128-3p(2), mmu-miR-136-5p(2), mmu-miR-382-3p(2), mmu-miR-425-5p(2), mmu-miR-300-3p(2), mmu-miR-32-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-146a-5p(1), mmu-miR-33-5p(1), mmu-miR-216a-5p(1), mmu-miR-222-3p(1), mmu-miR-132-3p(1), mmu-miR-203-3p(1), mmu-miR-125b-5p(1), mmu-miR-138-5p(1), mmu-miR-181b-5p(1), mmu-miR-214-3p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-541-5p(1), mmu-miR-499-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-1187(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-452-3p(1), mmu-miR-544-5p(1), mmu-miR-146b-5p(1), mmu-miR-338-3p(1), mmu-miR-181d-5p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCAGAACACTCAGGAGAAGTAGTGTC
siRNA sets
CTTCTCCTGAGTGTTCTGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCPKHD1_5297_ORF_1
0.8452
0.107284215
1
5043
ORF sequence:
ATGGTGCATAAGGAAGCCTGGCTCATCAGTGCTAAACAGGAACTGTTCCTGTACCAGACATACCCAGAAATCTTATCCGTGTTTCCAAAAGTTGGGAGCCTTGGGGGAAGAACGGACATCATCATTACGGGAGATTTCTTTGACCCTTCTGCCCGGGTTACCATTGCAGGCATCCCATGTGATATTAGATATGTGTCTCCCAGGAAGATTGAGTGCACTACCAGGGCTCCAGGAAATGAAGCAAGGCTCACTGCTCCTCAGGCAGGCAATCGAGGACTCCGTTTTGAAGTTGGAGATGCTACTAAGGATGTGGAGCTGACTGAAGCCACCCCAGGGTACAGGTGGCAGATAGTTCCTAATGCCAGTTCTCCATCTGGCTTTTGGTCAAAGGAAGGGAGACCTTTCAGAGCACGGCTCAGTGGGTTCTTCGTGGCGCCACAGACAAACAATTACACATTCTGGATCCAGGCAGACAGCCAAGCTTCCTTGTGTTTCAGTTCTTCAGAGGAGCCAAGGACCAAGGTAGAAGTGGCCTCTGTTGGGGTTGGCACTGCTGACTGGTTTGACTCTTGGGAGCAGATCGGGAATGAAGGGAGCTGGCACCAGAAGACAACCAAGCTAGAACTGCAGGGCGGAGCCAAGTACTACTTGGAAGCAGAGCAACATGGGATAGCTCCCAGCAGAGGGATGAGAATTGGTGTCCAGATCCACAACACCTGGTTGAATCCAGATGTGGTCAACACTTACCTTCTGGAGAAACACCAGATCCGAGCTCGAGCCCAGAGACTTCCAGAAATACAGGTGTTGCATGTGTCAGGTAAAGGAAACTTTTTCCTTACTTGGGGCAATGTCTCCAGCCAACCAGTTCCTGCAAATGCCACAGCCCAACAGATCCAAACCACCATTGAAGAGTTGCTTGTGGTGAAATGCAATCTGGCACCGTTTTCGGCCCATGTTCTTCTCCGGCTTGGATTTGAGCAAGGTTTAGAAGGCTCCAGGTCTGATGGGGTCCGCACCAGTTCAACTGAACCCTTCTGTGGCAGATTCAGCCTTGGTCAACTTGGACATCTTATCCTAATTCCAGAGGCTGCCGACAAGGGCTATCAGCTGGATCGATACCCGTATCTGTGCCTTGCGTACAGAGGCCATATGAACAAGACCCTGGACATGACTGTTTCTTTCCTCTTTGGCTTCCAAACTATCATGAAGAATATCACCTGTGATTGGAGTCTTACCGATCCCCACCCTGAGAGCTGGCAGTTCACTTGCATTAACCTCTGGGACACATGTCTATGTCACTCTGAGGATATCCAGTCTTCTCTGGCAAACACCCCATTGCTGGCTCATCGGATTGACATCCGCCCCGTGGTTCCGGAGGCAGGCCTGCTCTATGTGGATGAAATTATTCTTGCAGATACCAACGTAACAGTTTCTCAAGCTGATTCTGGAAGAGCCTGCCCAGGTGGGAATGTGGTGGAGTCAGTATCGGTGGTGGGAGTCCCTCCGGTCTACAGCATAAGCTCCTGGTTGGCAGGATGTGGCTCAGAGCTCCCTCTCATCACTGCATGCTCTGTGTCCACGGAGGGAACAGGAGATGGATCTGAATTGATTGAGGTGACAGCTCAAAGACTCCAGAGGACAAGCCCACCTTTGGGAGGACACTTCTTCCTTTACCTCTCTGACACAGTGATACCTGATGTTCCGGTGCGCATGTCTGCCCGACAGCTGCATAAGCTACTGCAGGACAGTGCTGATGAGTCCACATCTGGATATCTCAATGCCGGTGACTTCACTGTGACAGAGGATCTGAATTCCTGCTATGAACATGTGTGGACTCTTTCTTGGACCACTCAGACTGGGGATTTGCCCAATTTTATCAGGGTCTCTGATCAAAATCTTACTGGGGTGAATCCCACTGTAACTGCTCGCGTGGTATATGATGGTGGAGTTTTCCTTGGACCCATCTTTGGAGACATGTTGGCTACTGCCAACCAGCAAACTCAGGTGGCTGTACAGGTGAATGACATACCAGCCTATTGTTCAGGCTCCTGTTCTTTCCAATACCAGCAAGAGTCAACTCCCAGTGTGGATCATGTGTGGTACTCCCTTGGAAGCGATGTCAACTTGCTGGTTCATTTTACTGGAACTGGTTTCCCTAGAGACACCCAGTTCTTACAGGTCACGGTGAACAAAACTAGCTGTGAAGTTCTTTTCTCAAATGAAACCAATGTGGCCTGTGAGCTGGCTCTGCTACCAGTTGGAGTGCACCAGATTTTTATGCTGGTGATACCGTCAGGCCTTGCTGTTCATGCCAGTGGAGAAGACCTCCTCCTGCATGTGGAACCCAGGCTGGATGCTGTGGAGCCTTCTACAGCTGCAGAGATTGGAGGACGGTGGGTTACTCTCCGAGGCTCTAGTTTGGAAGGTGTTAGCCTGGTGTTATTTGGAACTCAGTCATGTGTCATTGATGCCATTAGAAGCAATTCACAACAAATTCAATGCAAAGTCCCACCTAGGGGGAAAGATGGATACACTGTGAATGTGACTGTGATCAGTGGCGACCACTCTACAGTTCTTGCCAGAGCATTTACATATGTCTCCTCTTTAAATCCAGTGATTGTGTCATTGAGCAGAAACAGAAGCAGCATAGCAGGAGGTGAGATTCTGTTCCTTGGGATGTCACTGCTGGTGAACTACACAGATCTGGATGTGCAAATCCATGTGCAGGATACTTCTGCTCAGGTCCTTTCACAGACAGCGTGGGGACTGGAGGTAGTGTTGCCTCCACTAGTACCTGGCATCCATGTGATTTCAGCATTCATCAATGGAGTCAGTATTCGTTCACAAGGGGTTGATCTCTATATCCAGTACCTCACTGAAGTTTTCAGCGTGGAACCTTGCTCTGGGTCTCTCTTGGGTGGAACTCTCCTCAGTCTCTTAGGAACAGGACTGGGCAGAGACCCAGCTCTGATTCGGGTGCTTGTGGACAATCATCCTTGTGATATTGTGAACTTAACGGAAGTGAACATTTGGTGTGAGACTCCTCCAGCTGTACTACCACCCAGGGCAGATGTTCTCACTGTCCTAGCCTCTGTGGAGATCTGGGCTGGCAACACTTCCTTCTTCCATGGACCAAGCTTGGTGGGGAAGGGCTTTACCTTCACATATGAAGCAGCAGCAACACCAGTGGTCACTGCTATGTGGGGAGAATTCAGGAACAACAGTGTGAGGTTTTATGTGGAAGGAAGTAACATCTCTGACTCAGTCATTCTTTTGGGGTCCTTGAAATGTGAACTTGAAGTACAATTTTTTGGTGATAGCATGAACTTGTCTGGGTGCTTTTTTCCTCTCCATAGTTTGGAAGCCGGGGTCTATACTCTCCAAGTTCGTCACAAGAGGATGGGGTTTGCCAATATGTCTGTGGTGCCTCAGAAATTTGAGTTGTCACCTCAGATTATTGCCATCTTCCCAACACATGGGTCTAAATGTGGTGGGACAGTACTTACTGTGAAGGGCATGGCCTTCAGTTCCAGAAAGAGGTCAGTTCATGTTGACATTTCAGGCCCTTTTGCTTGCATGATTTTGAGTTTGGAAGACCACACAGTCCTATGCCAGACCAGATTTGTGGGTGACCAATTTTCTGAAGCATCACTGGCTCTAAACATCACAGTTCTGGTCAATGGGCTGACCAGCAAGTGTAAGGGGAACTGTACACTCTTCATAGAGGAAGCAGCAACTCCTATTGTGGATGCTTTGACTATAAGCATCAGTGGGTCTCTAACCATGGTGCTGATGAGAGGCCGGAGGTTAGCTACCACTGCTGATGAGCCAATAGCATTTGTGGATGATCAACTTCCCTGCCACACAACATTCTTCAATACCAGCCATGTGGCATGCCAGATAAGAGATTTGGCCCCAGGCTTCCACTATCTGTCAGCTGTTCATACAAGTGCTGGATATGCTTGCCTCAATAGTGTTTCTAGAAACTTCTTCATCGTGCCTCAGGTGCTTGATTATTTTCCTAAGGACTTTAGCATCCATGGTGGAAGTCTCTTGACGATAAAAGGCACAGCCCTGCGAGGATGGAAAGCTACAGTTGTCTATGTTGGCCGGCAGGCTTGTCTAACAGTGAACTTCAGCTCTGACTTCATCCAGTGCATTGTTCCTGCAGGAAATGGCTCTGCTGCTCTGGAAATTGATGTGAATGGAGTTTTATACCACATAGGACTTGTTGATTACAGCAGTATCTTCACCCCAGAATTGCTTTCTGTTTCACGGAGCCAAGACATCTTAACCTTTACAGTGGCCCGGATCTCAGGGGCTGCAAATGTTGACATTTTTATTGGGACATCACCGTGTCTAGGTGTTGCTGGCAACCGTACAGTTCTCCAGTGCATGGTCCCTCTGCTTCCTGCTGGGGAGTATCTTGTCACAGGTTATGATCACAGCCGAGGGTGGGCCTCATCCACTCTCATTCTTGTGCTGAGAGCCACTGTGACCTCAGTGACCAAGAACTATGGTTGCCTGGGTGGAAGGCTTTTGCATGTGCTCGGAGCAGGATTTTCTCCAGGGAACATCTCAGCTGCCGTATGTGGTGCTCCATGCCAAGTCTTGGCTAATGCGACAGTGTCTGCCTTCAGCTGCTTGGTTCTGCCCCTGCATGTGTCCTTGGCTTTCCTATGTGACCTGAGGCATGCAGAAGACAGCTGTAAAGTCAGGAGCTCCACCTACTTGCGATGTGATTTGACTGTCTCCATGGGGACAGAGAGACTGCCTGGATCCTGGCCTTATGTCTACCTTTGTGAAGAGAGTTCCCTGTGCCTCTTCGAACCAGATCACTGGACAGAGTCAGTCTTTCCATCGTTCTCAGGCCTCTTCCTCAGCCCTAAAGTGGAAAGAGATGAAGTTCTCATCTATAATAGCTCCTGTAACATTACCATGGAAACTGAGGCAGAGATGGAGTGTGAGATGCCTAATCAGCCAATTACCGCCAAGATTACTGAAATACAGAAAAGCTGGGGCCAGAACACTCAGGAGAAGTAG
Peptide sequence:
MVHKEAWLISAKQELFLYQTYPEILSVFPKVGSLGGRTDIIITGDFFDPSARVTIAGIPCDIRYVSPRKIECTTRAPGNEARLTAPQAGNRGLRFEVGDATKDVELTEATPGYRWQIVPNASSPSGFWSKEGRPFRARLSGFFVAPQTNNYTFWIQADSQASLCFSSSEEPRTKVEVASVGVGTADWFDSWEQIGNEGSWHQKTTKLELQGGAKYYLEAEQHGIAPSRGMRIGVQIHNTWLNPDVVNTYLLEKHQIRARAQRLPEIQVLHVSGKGNFFLTWGNVSSQPVPANATAQQIQTTIEELLVVKCNLAPFSAHVLLRLGFEQGLEGSRSDGVRTSSTEPFCGRFSLGQLGHLILIPEAADKGYQLDRYPYLCLAYRGHMNKTLDMTVSFLFGFQTIMKNITCDWSLTDPHPESWQFTCINLWDTCLCHSEDIQSSLANTPLLAHRIDIRPVVPEAGLLYVDEIILADTNVTVSQADSGRACPGGNVVESVSVVGVPPVYSISSWLAGCGSELPLITACSVSTEGTGDGSELIEVTAQRLQRTSPPLGGHFFLYLSDTVIPDVPVRMSARQLHKLLQDSADESTSGYLNAGDFTVTEDLNSCYEHVWTLSWTTQTGDLPNFIRVSDQNLTGVNPTVTARVVYDGGVFLGPIFGDMLATANQQTQVAVQVNDIPAYCSGSCSFQYQQESTPSVDHVWYSLGSDVNLLVHFTGTGFPRDTQFLQVTVNKTSCEVLFSNETNVACELALLPVGVHQIFMLVIPSGLAVHASGEDLLLHVEPRLDAVEPSTAAEIGGRWVTLRGSSLEGVSLVLFGTQSCVIDAIRSNSQQIQCKVPPRGKDGYTVNVTVISGDHSTVLARAFTYVSSLNPVIVSLSRNRSSIAGGEILFLGMSLLVNYTDLDVQIHVQDTSAQVLSQTAWGLEVVLPPLVPGIHVISAFINGVSIRSQGVDLYIQYLTEVFSVEPCSGSLLGGTLLSLLGTGLGRDPALIRVLVDNHPCDIVNLTEVNIWCETPPAVLPPRADVLTVLASVEIWAGNTSFFHGPSLVGKGFTFTYEAAATPVVTAMWGEFRNNSVRFYVEGSNISDSVILLGSLKCELEVQFFGDSMNLSGCFFPLHSLEAGVYTLQVRHKRMGFANMSVVPQKFELSPQIIAIFPTHGSKCGGTVLTVKGMAFSSRKRSVHVDISGPFACMILSLEDHTVLCQTRFVGDQFSEASLALNITVLVNGLTSKCKGNCTLFIEEAATPIVDALTISISGSLTMVLMRGRRLATTADEPIAFVDDQLPCHTTFFNTSHVACQIRDLAPGFHYLSAVHTSAGYACLNSVSRNFFIVPQVLDYFPKDFSIHGGSLLTIKGTALRGWKATVVYVGRQACLTVNFSSDFIQCIVPAGNGSAALEIDVNGVLYHIGLVDYSSIFTPELLSVSRSQDILTFTVARISGAANVDIFIGTSPCLGVAGNRTVLQCMVPLLPAGEYLVTGYDHSRGWASSTLILVLRATVTSVTKNYGCLGGRLLHVLGAGFSPGNISAAVCGAPCQVLANATVSAFSCLVLPLHVSLAFLCDLRHAEDSCKVRSSTYLRCDLTVSMGTERLPGSWPYVYLCEESSLCLFEPDHWTESVFPSFSGLFLSPKVERDEVLIYNSSCNITMETEAEMECEMPNQPITAKITEIQKSWGQNTQEK
IRESfinder result
IRESfinder score
0.657959116
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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