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mmu_circOsbpl11_1677
Basic information of circular RNA
PanCircBase ID:
mmu_circOsbpl11_1677
mm39_Chr. Position ID:
chr16|33016443|33049518|+
Gene name:
Osbpl11
Transcript:
ENSMUST00000232100.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
2,3,4,5,6,7,8,9,10
Exon/intron offsets:
0,8598,9849,13852,18268,20640,28466,30783,32888
Genomic length:
33075
Exon/intron sizes in nt:
69,17,68,01,77,20,21,40,00,00,00,000
Flanking exon/introns:
chr16:33006370-33016443|chr16:33049518-33054792
Splice length:
1677
Other database IDs:
CIRCpedia: MMU_CIRCpedia_219092, circAtlas: mmu-Osbpl11_0013
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_43353
Human Ortholog IDs:
Mature spliced Sequence:
TGACCACATGGAGAGTGTTAATGGCTATTTAATGAAGTACACCAACCTTGTCACCGGGTGGCAGTACAGGTTTTTTGTTTTAAACAATGAAGCTGGGCTGTTGGAGTACTTTGTAAATGAACAGTCTAGAAATCAGAAACCCAGAGGGACTTTGCAGCTTGCGGGGGCCGTGATCTCTCCCAGCGATGAGGACTCGCACACCTTCACAGTGAATGCCGCCAGCGGGGAGCAGTATAAACTCAGAGCCACAGATGCTAAAGAGCGGCAGCATTGGGTGAGCAGACTTCAGATATGTACACAGCACCACACGGAAGCTATTGGAAAGAATAACCCTCCCCTGAAGTCCCGGAGCTTCTCGCTGGCATCTAGTGGTAATTCTCCCATATCCCAGCGGAGACCAAGTCAGAATGCCATGTCTTTTTTTAATGTTGGACATTCCAAACTGCAGTCAGTCAACAAAAGAGCCCATTTGCATCCAGACCATCTGGTGGAGGTCAGAGAAATGATGTCTCATGCGGAAGGACAACAACGAGACCTAATTAGACGGATCGAATGCCTTCCTGCTTCTGGCCTTCTCAGTTCCTTGGACCAGGACCTCTTGATGCTTAAAGCTACTTCCATGGCAACTATGAACTGCTTAAATGACTGCTTTCACATTCTGCAGCTGCAGCATGCCTCACACCAGAAGGGTGCACTGCCCTCAGGGACAACAATTGAATGGTTGGAACCAAAGATTCCTTTATCAAACCACTATAAAAATGGAGCTGAGCAGCCCTTTGCAACGGAGCCGAACAAGCCCATGGGAGCCCCGGAAGCGCAGTGCGTTGCAGAGTCTGGAGTATTAGCCAGGGAACCTGAAGACATCAATGCAGATGATGAGGTAGAGGACACCTGTGACAACAAGGAGGATGACCTGGGGGCCGTGGAGGAGCAGCGCAGTGTCATCCTGCACCTTCTGTCACAGCTCAAGCTGGGCATGGACTTAACCAGAGTGGTGCTTCCTACGTTTATCCTGGAGAAGCGTTCCTTACTGGAGATGTACGCAGATTTCATGTCGCATCCAGACCTGTTCATAGGCATCACCAATGGAGCCACGCCAGAGGACCGAATGATTCGATTTGTTGAGTACTACCTTACCTCATTTCATGAAGGCAGAAAGGGAGCCATTGCTAAGAAGCCGTACAACCCTATCATTGGAGAAACTTTCCACTGCTCCTGGAGGATGCCTAAGAGCGAAGTGGCATCTGGTGTGAGCAGCAGCTCTTCTACCCCAGCCATCACTGATCATGCTCCTCTGCCGGAGGAGGCTCCGACCCAGAGTGTCTCAGACTGCTACACTGTCAGATTCGTTGCTGAGCAGGTTTCCCATCATCCTCCAGTCTCAGGATTTTATGCAGAATGTGCAGAAAGGAAGATGTGTGTAAATGCACATGTCTGGACTAAAAGCAAGTTCTTGGGCATGTCAATAGGTGTGACAATGGTTGGAGAAGGTGTCCTTTGTCTGTTGGAGCACGGAGAGGAGTACACATTTTCTCTGCCTTGTGCATATGCCCGTTCCATTCTCACTGTCCCGTGGGTAGAACTAGGGGGCAAAGTCAGCGTCAACTGTGCAAAGACGGGATACTCAGCCAGCATCACCTTTCATACTAAGCCGTTCTATGGTGGCAAACTGCACCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACTAGGGGGCAAAGTCAGC
59.96
CCGGTGACAAGGTTGGTGTA
59.89
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAAAGTCAGCGTCAACTG
60.04
CCGGTGACAAGGTTGGTGTA
59.89
146
PCR template sequence:
TAGAACTAGGGGGCAAAGTCAGCGTCAACTGTGCAAAGACGGGATACTCAGCCAGCATCACCTTTCATACTAAGCCGTTCTATGGTGGCAAACTGCACCGTGACCACATGGAGAGTGTTAATGGCTATTTAATGAAGTACACCAACCTTGTCACCGGGTGGCAGTACAGGTTTTTTGTTTTAAACAATGAAGCTGGGCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
23
Interacting miRNAs (#binding sites)
mmu-miR-34c-5p(2), mmu-miR-298-5p(2), mmu-miR-136-5p(2), mmu-miR-9-5p(1), mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-17-5p(1), mmu-miR-1a-3p(1), mmu-miR-34a-5p(1), mmu-miR-106b-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-326-3p(1), mmu-miR-181b-5p(1), mmu-miR-125a-5p(1), mmu-miR-34b-5p(1), mmu-miR-342-3p(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1), mmu-miR-670-5p(1), mmu-miR-296-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCAAACTGCACCGTGACCACATGGAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCOSBPL11_1677_ORF_1
0.9524
0.201088675
0.999999999
3345
ORF sequence:
ATGGAGAGTGTTAATGGCTATTTAATGAAGTACACCAACCTTGTCACCGGGTGGCAGTACAGGTTTTTTGTTTTAAACAATGAAGCTGGGCTGTTGGAGTACTTTGTAAATGAACAGTCTAGAAATCAGAAACCCAGAGGGACTTTGCAGCTTGCGGGGGCCGTGATCTCTCCCAGCGATGAGGACTCGCACACCTTCACAGTGAATGCCGCCAGCGGGGAGCAGTATAAACTCAGAGCCACAGATGCTAAAGAGCGGCAGCATTGGGTGAGCAGACTTCAGATATGTACACAGCACCACACGGAAGCTATTGGAAAGAATAACCCTCCCCTGAAGTCCCGGAGCTTCTCGCTGGCATCTAGTGGTAATTCTCCCATATCCCAGCGGAGACCAAGTCAGAATGCCATGTCTTTTTTTAATGTTGGACATTCCAAACTGCAGTCAGTCAACAAAAGAGCCCATTTGCATCCAGACCATCTGGTGGAGGTCAGAGAAATGATGTCTCATGCGGAAGGACAACAACGAGACCTAATTAGACGGATCGAATGCCTTCCTGCTTCTGGCCTTCTCAGTTCCTTGGACCAGGACCTCTTGATGCTTAAAGCTACTTCCATGGCAACTATGAACTGCTTAAATGACTGCTTTCACATTCTGCAGCTGCAGCATGCCTCACACCAGAAGGGTGCACTGCCCTCAGGGACAACAATTGAATGGTTGGAACCAAAGATTCCTTTATCAAACCACTATAAAAATGGAGCTGAGCAGCCCTTTGCAACGGAGCCGAACAAGCCCATGGGAGCCCCGGAAGCGCAGTGCGTTGCAGAGTCTGGAGTATTAGCCAGGGAACCTGAAGACATCAATGCAGATGATGAGGTAGAGGACACCTGTGACAACAAGGAGGATGACCTGGGGGCCGTGGAGGAGCAGCGCAGTGTCATCCTGCACCTTCTGTCACAGCTCAAGCTGGGCATGGACTTAACCAGAGTGGTGCTTCCTACGTTTATCCTGGAGAAGCGTTCCTTACTGGAGATGTACGCAGATTTCATGTCGCATCCAGACCTGTTCATAGGCATCACCAATGGAGCCACGCCAGAGGACCGAATGATTCGATTTGTTGAGTACTACCTTACCTCATTTCATGAAGGCAGAAAGGGAGCCATTGCTAAGAAGCCGTACAACCCTATCATTGGAGAAACTTTCCACTGCTCCTGGAGGATGCCTAAGAGCGAAGTGGCATCTGGTGTGAGCAGCAGCTCTTCTACCCCAGCCATCACTGATCATGCTCCTCTGCCGGAGGAGGCTCCGACCCAGAGTGTCTCAGACTGCTACACTGTCAGATTCGTTGCTGAGCAGGTTTCCCATCATCCTCCAGTCTCAGGATTTTATGCAGAATGTGCAGAAAGGAAGATGTGTGTAAATGCACATGTCTGGACTAAAAGCAAGTTCTTGGGCATGTCAATAGGTGTGACAATGGTTGGAGAAGGTGTCCTTTGTCTGTTGGAGCACGGAGAGGAGTACACATTTTCTCTGCCTTGTGCATATGCCCGTTCCATTCTCACTGTCCCGTGGGTAGAACTAGGGGGCAAAGTCAGCGTCAACTGTGCAAAGACGGGATACTCAGCCAGCATCACCTTTCATACTAAGCCGTTCTATGGTGGCAAACTGCACCGTGACCACATGGAGAGTGTTAATGGCTATTTAATGAAGTACACCAACCTTGTCACCGGGTGGCAGTACAGGTTTTTTGTTTTAAACAATGAAGCTGGGCTGTTGGAGTACTTTGTAAATGAACAGTCTAGAAATCAGAAACCCAGAGGGACTTTGCAGCTTGCGGGGGCCGTGATCTCTCCCAGCGATGAGGACTCGCACACCTTCACAGTGAATGCCGCCAGCGGGGAGCAGTATAAACTCAGAGCCACAGATGCTAAAGAGCGGCAGCATTGGGTGAGCAGACTTCAGATATGTACACAGCACCACACGGAAGCTATTGGAAAGAATAACCCTCCCCTGAAGTCCCGGAGCTTCTCGCTGGCATCTAGTGGTAATTCTCCCATATCCCAGCGGAGACCAAGTCAGAATGCCATGTCTTTTTTTAATGTTGGACATTCCAAACTGCAGTCAGTCAACAAAAGAGCCCATTTGCATCCAGACCATCTGGTGGAGGTCAGAGAAATGATGTCTCATGCGGAAGGACAACAACGAGACCTAATTAGACGGATCGAATGCCTTCCTGCTTCTGGCCTTCTCAGTTCCTTGGACCAGGACCTCTTGATGCTTAAAGCTACTTCCATGGCAACTATGAACTGCTTAAATGACTGCTTTCACATTCTGCAGCTGCAGCATGCCTCACACCAGAAGGGTGCACTGCCCTCAGGGACAACAATTGAATGGTTGGAACCAAAGATTCCTTTATCAAACCACTATAAAAATGGAGCTGAGCAGCCCTTTGCAACGGAGCCGAACAAGCCCATGGGAGCCCCGGAAGCGCAGTGCGTTGCAGAGTCTGGAGTATTAGCCAGGGAACCTGAAGACATCAATGCAGATGATGAGGTAGAGGACACCTGTGACAACAAGGAGGATGACCTGGGGGCCGTGGAGGAGCAGCGCAGTGTCATCCTGCACCTTCTGTCACAGCTCAAGCTGGGCATGGACTTAACCAGAGTGGTGCTTCCTACGTTTATCCTGGAGAAGCGTTCCTTACTGGAGATGTACGCAGATTTCATGTCGCATCCAGACCTGTTCATAGGCATCACCAATGGAGCCACGCCAGAGGACCGAATGATTCGATTTGTTGAGTACTACCTTACCTCATTTCATGAAGGCAGAAAGGGAGCCATTGCTAAGAAGCCGTACAACCCTATCATTGGAGAAACTTTCCACTGCTCCTGGAGGATGCCTAAGAGCGAAGTGGCATCTGGTGTGAGCAGCAGCTCTTCTACCCCAGCCATCACTGATCATGCTCCTCTGCCGGAGGAGGCTCCGACCCAGAGTGTCTCAGACTGCTACACTGTCAGATTCGTTGCTGAGCAGGTTTCCCATCATCCTCCAGTCTCAGGATTTTATGCAGAATGTGCAGAAAGGAAGATGTGTGTAAATGCACATGTCTGGACTAAAAGCAAGTTCTTGGGCATGTCAATAGGTGTGACAATGGTTGGAGAAGGTGTCCTTTGTCTGTTGGAGCACGGAGAGGAGTACACATTTTCTCTGCCTTGTGCATATGCCCGTTCCATTCTCACTGTCCCGTGGGTAGAACTAGGGGGCAAAGTCAGCGTCAACTGTGCAAAGACGGGATACTCAGCCAGCATCACCTTTCATACTAAGCCGTTCTATGGTGGCAAACTGCAC
Peptide sequence:
MESVNGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNPPLKSRSFSLASSGNSPISQRRPSQNAMSFFNVGHSKLQSVNKRAHLHPDHLVEVREMMSHAEGQQRDLIRRIECLPASGLLSSLDQDLLMLKATSMATMNCLNDCFHILQLQHASHQKGALPSGTTIEWLEPKIPLSNHYKNGAEQPFATEPNKPMGAPEAQCVAESGVLAREPEDINADDEVEDTCDNKEDDLGAVEEQRSVILHLLSQLKLGMDLTRVVLPTFILEKRSLLEMYADFMSHPDLFIGITNGATPEDRMIRFVEYYLTSFHEGRKGAIAKKPYNPIIGETFHCSWRMPKSEVASGVSSSSSTPAITDHAPLPEEAPTQSVSDCYTVRFVAEQVSHHPPVSGFYAECAERKMCVNAHVWTKSKFLGMSIGVTMVGEGVLCLLEHGEEYTFSLPCAYARSILTVPWVELGGKVSVNCAKTGYSASITFHTKPFYGGKLHRDHMESVNGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIGKNNPPLKSRSFSLASSGNSPISQRRPSQNAMSFFNVGHSKLQSVNKRAHLHPDHLVEVREMMSHAEGQQRDLIRRIECLPASGLLSSLDQDLLMLKATSMATMNCLNDCFHILQLQHASHQKGALPSGTTIEWLEPKIPLSNHYKNGAEQPFATEPNKPMGAPEAQCVAESGVLAREPEDINADDEVEDTCDNKEDDLGAVEEQRSVILHLLSQLKLGMDLTRVVLPTFILEKRSLLEMYADFMSHPDLFIGITNGATPEDRMIRFVEYYLTSFHEGRKGAIAKKPYNPIIGETFHCSWRMPKSEVASGVSSSSSTPAITDHAPLPEEAPTQSVSDCYTVRFVAEQVSHHPPVSGFYAECAERKMCVNAHVWTKSKFLGMSIGVTMVGEGVLCLLEHGEEYTFSLPCAYARSILTVPWVELGGKVSVNCAKTGYSASITFHTKPFYGGKLH
IRESfinder result
IRESfinder score
0.487506096
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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