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mmu_circOga_996

Basic information of circular RNA
PanCircBase ID:

mmu_circOga_996

mm39_Chr. Position ID:

chr19|45758489|45767522|-

Gene name:

Oga

Transcript:

ENSMUST00000026243.5

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

7

Exon/intron indexes:

8,7,6,5,4,3,2

Exon/intron offsets:

0,1631,3611,5997,6836,8536,8981

Genomic length:

9033

Exon/intron sizes in nt:

159,285,99,172,131,98,52

Flanking exon/introns:

chr19:45756446-45758489|chr19:45767522-45771370

Splice length:

996

Other database IDs:

circAtlas: mmu-Mgea5_0002

circAtlas: hsa-MGEA5_0002, CIRCpedia: HSA_CIRCpedia_76862

Human Ortholog IDs:
Mature spliced Sequence:

GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TCTCTACAGCCCACAGATGG

58.51

TCCCATTTCTGAAGCCTTCT

56.42

147

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

TCTCTACAGCCCACAGATGG

58.51

TTCCCATTTCTGAAGCCTTCT

57.19

148

PCR template sequence:

GAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

10

Interacting miRNAs (#binding sites)

mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-34c-5p(1), mmu-miR-101a-3p(1), mmu-miR-106b-5p(1), mmu-miR-298-5p(1), mmu-miR-101b-3p(1), mmu-miR-697(1)

siRNAs for circular RNA silencing
Junction sequence

CATCAGTACAGCAGGTTTTATGGAAG

siRNA sets

TAAAACCTGCTGTACTGAT, AAAACCTGCTGTACTGATG, CATAAAACCTGCTGTACTG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCOGA_996_ORF_1

0.8619

0.131081835

0.999984126

1968

ORF sequence:

ATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGC

Peptide sequence:

MEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSRFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYS

IRESfinder result

IRESfinder score

0.677268443

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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Institute of Life sciences, Bhubaneswar, India

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