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mmu_circOga_996
Basic information of circular RNA
PanCircBase ID:
mmu_circOga_996
mm39_Chr. Position ID:
chr19|45758489|45767522|-
Gene name:
Oga
Transcript:
ENSMUST00000026243.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
8,7,6,5,4,3,2
Exon/intron offsets:
0,1631,3611,5997,6836,8536,8981
Genomic length:
9033
Exon/intron sizes in nt:
159,285,99,172,131,98,52
Flanking exon/introns:
chr19:45756446-45758489|chr19:45767522-45771370
Splice length:
996
Other database IDs:
circAtlas: mmu-Mgea5_0002
circAtlas: hsa-MGEA5_0002, CIRCpedia: HSA_CIRCpedia_76862
Human Ortholog IDs:
Mature spliced Sequence:
GGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTACAGCCCACAGATGG
58.51
TCCCATTTCTGAAGCCTTCT
56.42
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTCTACAGCCCACAGATGG
58.51
TTCCCATTTCTGAAGCCTTCT
57.19
148
PCR template sequence:
GAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-34c-5p(1), mmu-miR-101a-3p(1), mmu-miR-106b-5p(1), mmu-miR-298-5p(1), mmu-miR-101b-3p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
CATCAGTACAGCAGGTTTTATGGAAG
siRNA sets
TAAAACCTGCTGTACTGAT, AAAACCTGCTGTACTGATG, CATAAAACCTGCTGTACTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCOGA_996_ORF_1
0.8619
0.131081835
0.999984126
1968
ORF sequence:
ATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGGTTTTATGGAAGACCTTGGGTTATGGAGCAGAGAAAAGAGCTCTTTAGAAGGCTTCAGAAATGGGAATTAAACACATACTTGTATGCTCCAAAAGATGACTACAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGC
Peptide sequence:
MEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSRFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDYKHRMFWREMYSVEEAEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYS
IRESfinder result
IRESfinder score
0.677268443
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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