top of page
mmu_circOga_2265
Basic information of circular RNA
PanCircBase ID:
mmu_circOga_2265
mm39_Chr. Position ID:
chr19|45743045|45765456|-
Gene name:
Oga
Transcript:
ENSMUST00000026243.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
15,14,13,12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,3298,3742,6497,7578,10843,12787,15444,17075,19055,21441,22280
Genomic length:
22411
Exon/intron sizes in nt:
16,01,93,86,10,58,61,70,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr19:45740719-45743045|chr19:45765456-45767025
Splice length:
2265
Other database IDs:
circAtlas: mmu-Mgea5_0010
circBase: hsa_circ_0092426, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_167322
Human Ortholog IDs:
Mature spliced Sequence:
AGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGGGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAGCGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGGCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAAGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAGAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGACTGACCCGAGTGTTG
59.61
TCTAGTCCTGGCGAAATAGCA
58.62
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTGACTGACCCGAGTGTTG
59.61
CTAGTCCTGGCGAAATAGCA
57.11
140
PCR template sequence:
TTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-34c-5p(1), mmu-miR-101a-3p(1), mmu-miR-106b-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-101b-3p(1), mmu-miR-433-3p(1), mmu-miR-96-5p(1), mmu-miR-182-5p(1), mmu-miR-335-3p(1), mmu-miR-188-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGAAGGCCAATGAGCAACTTATGAC
siRNA sets
CATAAGTTGCTCATTGGCC, ATAAGTTGCTCATTGGCCT, TCATAAGTTGCTCATTGGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCOGA_2265_ORF_1
0.8817
0.193258738
1
4521
ORF sequence:
ATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGGGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAGCGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGGCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAAGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAGAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAATGAGCAACTTATGACTCTGATCTCTGCTGCACGAGAATATGAAATAGAATTCATCTATGCTATTTCGCCAGGACTAGATATCACTTTTTCTAACCCCAAGGAAGTATCAACGTTGAAACGCAAATTGGACCAGGTCTCTCAGTTTGGGTGCAGGTCGTTTGCTTTGCTTTTTGATGATATTGACCATAATATGTGTGCAGCAGACAAAGAGGTGTTCAGTTCTTTTGCACATGCACAAGTTTCCATCACCAATGAAATTTATCAGTACCTGGGAGAGCCAGAAACCTTCCTCTTCTGCCCTACAGAATACTGTGGCACTTTCTGTTATCCAAATGTATCTCAGTCTCCTTACTTGAGGACTGTGGGTGAGAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCAAAAGTTGTTTCAAAAGAAATTCCAGTGGAATCTATTGAAGAAGTTTCTAAGATCATTAAGAGAGCTCCAGTGATCTGGGATAACATTCATGCTAATGATTATGATCAGAAGAGGCTGTTTCTGGGTCCCTACAAAGGAAGATCCACAGAGCTCATCCCACGGTTAAAGGGAGTACTAACCAATCCAAATTGTGAATTTGAAGCTAACTACGTTGCCATACACACCCTTGCCACTTGGTACAAGTCAAACATGAACGGAGTGAGGAAGGATGTGGTGATGACTGACAGTGAAGACAGTACTGTATCAATACAGATAAAGTTAGAAAATGAAGGCAGTGACGAAGACATTGAGACTGATGTTCTCTACAGCCCACAGATGGCTTTAAAGCTGGCTTTAACTGAGTGGCTGCAGGAGTTCGGTGTCCCTCATCAGTACAGCAGTAGGCAAGTTGCACACAGTGGAGCTAAGACAAGTGTAGTTGATGGGACTCCCTTAGTTGCTGCACCCTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAGGGAGCAGCTTTGAGTGGTGAACCCTCAGTTCTGACCAAGGAAGAGGAAAAGAAACAGCCAGATGAGGAACCCATGGATATGGTGGTCGAAAAGCAAGAAGAAGCAGAGCACAAGAATGACAACCAGATACTAACTGAGATTGTTGAAGCGAAGATGGCAGAGGAGTTGAGACCAATGGACACGGATAAGGAGAGCATGGCTGAGTCCAAATCCCCAGAGATGTCCATGCAGGAAGACTGCATTCCTGACGTGGCTCCTATGCAGACAGATGAGCAAACACAGAAGGAGCAGTTTGTGCCAGGTCCAAATGAAAAGCCTCTGTACACCGCAGAGCCTGTGACTCTGGAGGACTTACAGTTACTCGCTGACCTGTTCTACCTTCCTTACGAGCACGGGCCCAAAGGAGCGCAGATGCTACGGGAATTCCAGTGGCTTCGAGCAAACAGCAGTGTTGTCAGTGTCAACTGCAAAGGGAAAGACTCAGAAAAAATAGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGCACTAGTGATGGGGATGTTCACCCGGCTTTCCAACTGTGCCAACAGGACCATCCTTTATGACATGTACTCCTATGTGTGGGACATCAAGAGTATAATGTCTATGGTGAAATCTTTTGTGCAGTGGTTAGGGTGTCGTAGTCACTCTTCAGCACAGTTCTTAATTGGAGACCAGGAGCCCTGGGCCTTTAGAGGTGGTCTAGCAGGAGAGTTCCAGCGTTTGCTGCCAATTGATGGAGCAAATGATCTCTTTTTTCAACCACCCCCACTGACTCCAACCTCCAAAGTTTATACTATCAGACCTTATTTCCCTAAAGATGAGGCTTCCGTGTACAAGATTTGCAGAGAAATGTATGATGATGGAGTGGGTTTCCCTTTTCAAAGTCAACCTGACCTTATTGGAGACAAGTTAGTAGGAGGACTGCTCTCCCTCAGCCTGGATTACTGCTTCGTCCTAGAAGATGAAGATGGCATTTGTGGTTATGCCTTAGGCACAGTAGATGTGACCCCCTTCATTAAAAAGTGTAAAATTTCCTGGATTCCCTTCATGCAAGAGAAGTATACCAAGCCAAATGGTGACAAAGAGCTCTCAGAGGCTGAGAAAATAATGTTGAGTTTCCATGAAGAGCAGGAGGTGTTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAAATGGATATTCATAAAAAAGTGACTGACCCGAGTGTTGCCAAAAGCATGATGGCTTGCCTCCTGTCTTCACTGAAGGCCAAT
Peptide sequence:
MTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKTSVVDGTPLVAAPSLNATTVVTTVYQEPIMSQGAALSGEPSVLTKEEEKKQPDEEPMDMVVEKQEEAEHKNDNQILTEIVEAKMAEELRPMDTDKESMAESKSPEMSMQEDCIPDVAPMQTDEQTQKEQFVPGPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCALVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGFPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFPSLIKMDIHKKVTDPSVAKSMMACLLSSLKANEQLMTLISAAREYEIEFIYAISPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFALLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGAKTSVVDGTPLVAAPSLNATTVVTTVYQEPIMSQGAALSGEPSVLTKEEEKKQPDEEPMDMVVEKQEEAEHKNDNQILTEIVEAKMAEELRPMDTDKESMAESKSPEMSMQEDCIPDVAPMQTDEQTQKEQFVPGPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCALVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKICREMYDDGVGFPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYALGTVDVTPFIKKCKISWIPFMQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFPSLIKMDIHKKVTDPSVAKSMMACLLSSLKAN
IRESfinder result
IRESfinder score
0.574633373
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page