top of page
mmu_circOdad2_1372
Basic information of circular RNA
PanCircBase ID:
mmu_circOdad2_1372
mm39_Chr. Position ID:
chr18|7181733|7265148|-
Gene name:
Odad2
Transcript:
ENSMUST00000234788.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
18,17,16,15,14,13,12,11
Exon/intron offsets:
0,29665,32835,35201,36014,40812,41796,83267
Genomic length:
83415
Exon/intron sizes in nt:
1,15,24,31,55,11,12,43,00,00,00,000
Flanking exon/introns:
chr18:7129587-7181733|chr18:7265148-7266882
Splice length:
1372
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TAAGGGTGGTGAGAAGGTTGAAGAGACTGTCAGCGAGAGCTCCTCAGAGAGTGAGGAGGACGAGGAGCCTCCAGACCACCGCCAGGAAGCCAATGCAGACCTCCCTTCGGAATACTGGCAGATTCAGAAGCTGGTGAAATATTTAAAGGGGGGGAATCAGACGGCAACGGTGATTGCCTTGTGTTCCATGAGGGATTTCAACCTAGCTCAAGAGACCTGCCAGCTAGCAATTAGAGATGTTGGCGGGCTTGAAGTCTTAATAAATCTGCTCGATACAGATGAAGTCAAGTGCAAGATTGGTTCATTAAAAATCCTGAAGGAAATCAGTCATAATCCTCAAATCAGACGTAATATTGTTGACCTTGGGGGCCTACCAATTATGGTTAATATACTTGATTCTCCACACAAGAGTCTTAAGTGTTTGTCAGCTGAGACGATAGCAAATGTTGCCAAGTTCAAGAGAGCTCGGCGGGCAGTGAGGCAACACGGAGGCATTACCAAGCTGGTTGCTCTATTGGACTGTGGACAGAATTCAACAGAGCCAACTCAACCAAGCCTGTATGAAACCAGGGATGTAGAAGTGGCTCGATGCGGGGCCTTGGCGCTCTGGAGCTGCAGTAAGAGTCACTCGAACAAAGAAGCCATTCGTAAAGCTGGGGGCATCCCCTTGCTGGCTCGGCTACTGAAGACTTCACATGAAAACATGCTCATTCCAGTGGTGGGGACATTGCAAGAATGTGCATCAGAGGAAAACTACCGAGCTGCCATCAAGGCAGAAAGGATCATAGAGAACCTCGTGAAGAACCTGAACAGCGAGAATGAGCAGCTCCAGGAGCACTGTGCCATGGCCATCTACCAGTGTGCTGAAGATGAGGAGACCCGAGACCTGGTTAGACTGCATGGAGGACTTAAACCCCTGGCCAGTCTACTCAATAATACAGACAATAAAGAACGATTAGCTGCTGTTACTGGGGCAATATGGAAATGCTCCATCAGCAAAGAAAATGTGATTAAGTTTCGAGAATACAAAGCCATTGAGACACTGGTTGGACTTTTAACTGATCAGCCTGAAGAAGTGCTCGTGAATGTGGTTGGGGCCTTGGGAGAATGCTGTCAAGAATATGAAAATCGGGTCCTAGTCCGGAAGTGTGGTGGCATCCAACCTCTCGTGAACCTCCTGGTTGGAATAAACCAAGCACTTCTTGTGAATGTCACAAAAGCTGTGGGCGCATGCGCAGTAGAACCAGAAAGTATGGCGATAATTGACCGCTTAGATGGAGTTCGCTTATTGTGGTCCCTGCTCAAAAACCCACACCCAGATGTGAAGGCCAGTGCAGCATGGGCACTTTGTCCCTGCATTGAAAATGCAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCCTGCTCAAAAACCCACA
59.74
TCCTCGTCCTCCTCACTCTC
59.75
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCCTGCTCAAAAACCCACA
59.74
CCTCGTCCTCCTCACTCTCT
59.75
143
PCR template sequence:
AGATGGAGTTCGCTTATTGTGGTCCCTGCTCAAAAACCCACACCCAGATGTGAAGGCCAGTGCAGCATGGGCACTTTGTCCCTGCATTGAAAATGCAAAGTAAGGGTGGTGAGAAGGTTGAAGAGACTGTCAGCGAGAGCTCCTCAGAGAGTGAGGAGGACGAGGAGCCTCCAGACCACCGCCAGGAAGCCAATGCAGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
23
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-20b-5p(1), mmu-miR-15a-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-375-3p(1), mmu-miR-150-5p(1), mmu-miR-26a-5p(1), mmu-miR-106b-5p(1), mmu-miR-25-3p(1), mmu-miR-26b-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-382-3p(1), mmu-miR-194-5p(1), mmu-miR-324-3p(1), mmu-miR-499-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-802-5p(1), mmu-miR-335-3p(1), mmu-miR-669d-5p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGAAAATGCAAAGTAAGGGTGGTGAG
siRNA sets
TCACCACCCTTACTTTGCA, CTCACCACCCTTACTTTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCODAD2_1372_ORF_1
1.0097
0.23035206
0.999430844
1380
ORF sequence:
ATGCAAAGTAAGGGTGGTGAGAAGGTTGAAGAGACTGTCAGCGAGAGCTCCTCAGAGAGTGAGGAGGACGAGGAGCCTCCAGACCACCGCCAGGAAGCCAATGCAGACCTCCCTTCGGAATACTGGCAGATTCAGAAGCTGGTGAAATATTTAAAGGGGGGGAATCAGACGGCAACGGTGATTGCCTTGTGTTCCATGAGGGATTTCAACCTAGCTCAAGAGACCTGCCAGCTAGCAATTAGAGATGTTGGCGGGCTTGAAGTCTTAATAAATCTGCTCGATACAGATGAAGTCAAGTGCAAGATTGGTTCATTAAAAATCCTGAAGGAAATCAGTCATAATCCTCAAATCAGACGTAATATTGTTGACCTTGGGGGCCTACCAATTATGGTTAATATACTTGATTCTCCACACAAGAGTCTTAAGTGTTTGTCAGCTGAGACGATAGCAAATGTTGCCAAGTTCAAGAGAGCTCGGCGGGCAGTGAGGCAACACGGAGGCATTACCAAGCTGGTTGCTCTATTGGACTGTGGACAGAATTCAACAGAGCCAACTCAACCAAGCCTGTATGAAACCAGGGATGTAGAAGTGGCTCGATGCGGGGCCTTGGCGCTCTGGAGCTGCAGTAAGAGTCACTCGAACAAAGAAGCCATTCGTAAAGCTGGGGGCATCCCCTTGCTGGCTCGGCTACTGAAGACTTCACATGAAAACATGCTCATTCCAGTGGTGGGGACATTGCAAGAATGTGCATCAGAGGAAAACTACCGAGCTGCCATCAAGGCAGAAAGGATCATAGAGAACCTCGTGAAGAACCTGAACAGCGAGAATGAGCAGCTCCAGGAGCACTGTGCCATGGCCATCTACCAGTGTGCTGAAGATGAGGAGACCCGAGACCTGGTTAGACTGCATGGAGGACTTAAACCCCTGGCCAGTCTACTCAATAATACAGACAATAAAGAACGATTAGCTGCTGTTACTGGGGCAATATGGAAATGCTCCATCAGCAAAGAAAATGTGATTAAGTTTCGAGAATACAAAGCCATTGAGACACTGGTTGGACTTTTAACTGATCAGCCTGAAGAAGTGCTCGTGAATGTGGTTGGGGCCTTGGGAGAATGCTGTCAAGAATATGAAAATCGGGTCCTAGTCCGGAAGTGTGGTGGCATCCAACCTCTCGTGAACCTCCTGGTTGGAATAAACCAAGCACTTCTTGTGAATGTCACAAAAGCTGTGGGCGCATGCGCAGTAGAACCAGAAAGTATGGCGATAATTGACCGCTTAGATGGAGTTCGCTTATTGTGGTCCCTGCTCAAAAACCCACACCCAGATGTGAAGGCCAGTGCAGCATGGGCACTTTGTCCCTGCATTGAAAATGCAAAG
Peptide sequence:
MQSKGGEKVEETVSESSSESEEDEEPPDHRQEANADLPSEYWQIQKLVKYLKGGNQTATVIALCSMRDFNLAQETCQLAIRDVGGLEVLINLLDTDEVKCKIGSLKILKEISHNPQIRRNIVDLGGLPIMVNILDSPHKSLKCLSAETIANVAKFKRARRAVRQHGGITKLVALLDCGQNSTEPTQPSLYETRDVEVARCGALALWSCSKSHSNKEAIRKAGGIPLLARLLKTSHENMLIPVVGTLQECASEENYRAAIKAERIIENLVKNLNSENEQLQEHCAMAIYQCAEDEETRDLVRLHGGLKPLASLLNNTDNKERLAAVTGAIWKCSISKENVIKFREYKAIETLVGLLTDQPEEVLVNVVGALGECCQEYENRVLVRKCGGIQPLVNLLVGINQALLVNVTKAVGACAVEPESMAIIDRLDGVRLLWSLLKNPHPDVKASAAWALCPCIENAK
IRESfinder result
IRESfinder score
0.478263652
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page