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mmu_circNsd1_3714
Basic information of circular RNA
PanCircBase ID:
mmu_circNsd1_3714
mm39_Chr. Position ID:
chr13|55381707|55425488|+
Gene name:
Nsd1
Transcript:
ENSMUST00000099490.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
3,4,5,6,7,8,9,10,11
Exon/intron offsets:
0,4795,11623,26449,27649,29438,34553,42628,43637
Genomic length:
43781
Exon/intron sizes in nt:
136,173,2560,125,271,110,76,119,144
Flanking exon/introns:
chr13:55361963-55381707|chr13:55425488-55430471
Splice length:
3714
Other database IDs:
CIRCpedia: MMU_CIRCpedia_23109, circAtlas: mmu-Nsd1_0060
Human Ortholog IDs:
Mature spliced Sequence:
TGTCAACCGAAGAAAAAGTCTACACCACTGAAATATGAAGTTGGAGATCTTATTTGGGCAAAATTCAAGAGACGCCCTTGGTGGCCCTGCAGGATCTGTTCTGATCCATTGATTAATACACACTCAAAAATGAAAGTTGCCAATAGGAGGCCATATCGCGAATACTACGTAGAGGCTTTTGGAGACCCTTCTGAAAAAGCCTGGGTGGCTGGAAAAGCAATCGTCATGTTTGAAGGCAGACATCAATTTGAAGAACTACCTGTCCTTAGGAAAAGAGGGAAACAGAAAGAAAAAGGATATAGGCATAAGGTTCCTCAGAAGATTTTGAGTAAATGGGAAGCCAGCGTTGGTCTTGCCGAGCAATATGATGTTCCCAAAGGCTCTAAGAACCAAAAGTGTGTCAGTAGCTCAGTCAAGTTGGACAGTGAGGAAGATATGCCATTTGAGGACTGTACAAACGATCCTGATTCAGAACACCTGTTGCTTAATGGCTGCTTGAAGTCTCTGGCTTTTGATTCTGAGCATTCTGCAGATGAAAAGGAAAAGCCCTGTGCCAAGTCTCGAGTTAGAAAAAGCTCTGATAATATAAAAAGGACTAGTGTGAAAAAGGATCTGGTGCCATTTGAATCACGTAAAGAAGAACGGAGGGGGAAAATTCCAGACAACCTTGGCCTAGACTTTATCTCTGGGGGTGTATCTGATAAACAGGCTTCTAATGAACTTTCCAGGATAGCAAACAGCCTCACAGGGTCTAGCACTGCACCAGGAAGTTTCCTCTTTTCTTCCAGTGTACAGAACACTGCTAAGACAGACTTTGAGACTCCAGATTGCGATTCCTTATCAGGTTTGTCTGAGAGTGCTTTAATCTCTAAACATTCTGGAGAGAAAAAGAAACTCCAACCAGGCCAGGTCTGCAGCTCAAAAGTACAGCTCTGCTACGTTGGAGCTGGTGATGAGGAAAAGCGAAGCAATTCTGTCAGTGTGAGTACCACTTCTGATGATGGCTGCAGTGACCTGGATCCTACAGAGCACAACTCAGGATTCCAGAACAGTGTCCTTGGAATTACAGATGCTTTTGATAAAACAGAGAATGCTTTATCGGTGCACAAAAATGAAACACAGTATTCTAGATATCCTGTCACAAACAGGATAAAAGAGAAACAGAAATCCCTCATTACTAATTCCCATGCAGACCATTTAATGGGTTCTACCAAGACAATGGAGCCTGAAACTGCTGAGTTGTCTCAGGTCAATCTTTCTGATCTTAAAATTAGTAGTCCTATTCCCAAACCCCAACCAGAATTTAGGAATGATGGTCTCACTACAAAATTCAGCGCGCCACCAGGCATTCGTAATGAAAATCCACTGACAAAGGGTGGGCTTGCAAATCAAACTCTATTACCTCTGAAATGCAGACAGCCCAAGTTTCGTAGTATAAAATGCAAGCATAAAGAAAGCCCAGCTGTTGCAGAAACCTCAGCTACAAGTGAGGACCTCAGTTTGAAATGCTGTTCTTCTGATACCAATGGCTCTCCTTTGGCCAATATATCCAAAAGTGGGAAAGGAGAGGGGCTAAAACTACTGAACAATATGCATGAGAAAACCAGAGATTCTAGTGACATAGAAACAGCAGTGGTGAAGCACGTTCTTTCGGAACTGAAGGAGCTCTCGTACAGATCATTAAGTGAAGACGTAAGTGATTCTGGAACGGCAAAGGCATCAAAGCCATTACTGTTTTCTTCTGCTTCTAGTCAGAATCATATACCAATTGAACCAGATTACAAGTTTAGCACATTGCTGATGATGCTGAAGGATATGCATGACAGTAAGACAAAGGAGCAGCGGTTAATGACTGCTCAAAATCTGGCTTCCTACAGGACTCCAGATCGTGGGGACTGTTCTTCTGGTAGCCCTGTAGGGACATCAAAAGTTTTGGTGTTAGGAAGCTCCACACCCAATTCTGAAAAGCCTGGAGATAGCACTCAGGACTCAGTTCACCAGAGTCCTGGTGGGGGTGACTCTGCCTTGTCTGGAGAGTTGTCTTCTTCCCTGTCCAGCTTAGCTTCTGACAAAAGAGAGCTCCCTGCTTGTGGTAAAATTCGCTCTAACTGTATCCCAAGGCGCAACTGTGGCCGAGCAAAGCCATCATCCAAGTTGAGAGAAACCATTTCAGCCCAGATGGTAAAACCTTCAGTAAACCCAAAAGCCTTAAAGACTGAGCGGAAGAGAAAGTTCAGCCGACTTCCAGCTGTGACACTTGCTGCTAACAGACTGGGAAACAAAGAAAGTGGATCAGTGAATGGCCCATCCAGGGGTGGGGCTGAAGATCCTGGTAAAGAAGAGCCTCTGCAACAAATGGACCTTTTAAGAAATGAAGACACACATTTTTCAGATGTACATTTTGATAGCAAGGCTAAACAATCGGACCCTGATAAAAATCTTGAAAAAGAACCTTCTTTTGAGAACAGAAAAGGCCCAGAGTTGGGCTCTGAAATGAACACTGAGAATGATGAACTCCATGGTGTTAATCAGGTGGTGCCTAAAAAGCGGTGGCAGCGATTAAACCAAAGGCGCCCTAAGCCCGGAAAGCGTGCTAACAGATTTAGGGAGAAAGAAAACTCGGAGGGTGCTTTTGGAGTCTTACTTCCTGCTGACGCTGTGCAGAAGGCCCGGGAAGACTACTTAGAACAAAGAGCTCCTCCTACAAGTAAACCTGAGGACTCAGCAGCAGATCCCAATCATGGCAGCCACTCTGAATCGGTTGCGCCTCGGCTGAATGTTTGTGAGAAGTCCAGTGTTGGCATGGGTGATGTAGAAAAGGAGACAGGAATTCCCAGTTTGATGCCACAGACCAAGCTCCCTGAGCCAGCTATTCGGTCAGAGAAGAAACGCCTCAGGAAGCCGAGCAAGTGGCTTCTGGAATATACAGAAGAATATGATCAGATATTTGCTCCTAAGAAAAAACAAAAGAAGGTACAGGAACAAGTGCATAAGGTAAGTTCGCGCTGTGAAGACGAAAGCCTTCTTGCCCGATGTCAACCTAGTGCTCAGAACAAGCAGGTGGATGAGAATTCTTTGATTTCAACTAAAGAAGAGCCTCCAGTTCTTGAACGAGAGGCTCCATTTTTGGAAGGGCCATTGGCTCAGTCAGATCTTGGAGTTACACATGCTGAGTTGCCACAGCTGACCTTGTCTGTTCCTGTGGCTCCAGAAGCCTCTCCGCGGCCTGCCCTTGAGTCTGAGGAATTGCTCGTTAAGACACCAGGAAATTATGAAAGTAAGCGTCAAAGAAAACCAACTAAGAAACTTCTTGAATCTAATGATTTAGACCCTGGATTTATGCCCAAGAAGGGTGACCTTGGCCTTTCTAGAAAGTGCTTTGAAGCCAGTCGCTCGGGAAATGGTATTGTTGAATCACGGGCTACATCTCATTTGAAAGAGTTCAGTGGAGGCACTACCAAGATCTTTGATAAACCAAGGAAACGGAAACGGCAGAGGCTTGTCACAGCCAGAGTGCACTATAAAAAAGTGAAGAAGGAGGACTTAACAAAAGACACACCCAGCTCGGAGGGAGAACTGCTGATTCACAGGACTGCTGCCAGCCCCAAGGAGATTCTTGAAGAGGGTGTAGAACATGATCCTGGGATGTCTGCATCCAAGAAACTGCAGGTTGAAAGAGGCGGAGGAGCGGCACTCAAGGAGAATGTGTGTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CATGATCCTGGGATGTCTGCA
59.86
CACCAAGGGCGTCTCTTGAA
60.25
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACATGATCCTGGGATGTCTGC
59.86
CACCAAGGGCGTCTCTTGAA
60.25
165
PCR template sequence:
TCTTGAAGAGGGTGTAGAACATGATCCTGGGATGTCTGCATCCAAGAAACTGCAGGTTGAAAGAGGCGGAGGAGCGGCACTCAAGGAGAATGTGTGTCAGTGTCAACCGAAGAAAAAGTCTACACCACTGAAATATGAAGTTGGAGATCTTATTTGGGCAAAATTCAAGAGACGCCCTTGGTGGCCCTGCAGGATCTGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
32
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(2), mmu-miR-96-5p(2), mmu-miR-383-5p(2), mmu-miR-137-3p(1), mmu-miR-16-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-135a-5p(1), mmu-miR-31-5p(1), mmu-miR-322-5p(1), mmu-miR-298-5p(1), mmu-miR-196a-5p(1), mmu-miR-132-3p(1), mmu-miR-203-3p(1), mmu-miR-326-3p(1), mmu-miR-136-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-382-3p(1), mmu-miR-212-3p(1), mmu-miR-511-3p(1), mmu-miR-541-5p(1), mmu-miR-98-5p(1), mmu-miR-27a-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-129-5p(1), mmu-miR-335-3p(1), mmu-miR-1199-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAATGTGTGTCAGTGTCAACCGAAGA
siRNA sets
TTGACACTGACACACATTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNSD1_3714_ORF_1
1.0145
0.118899642
1
7299
ORF sequence:
ATGAAAGTTGCCAATAGGAGGCCATATCGCGAATACTACGTAGAGGCTTTTGGAGACCCTTCTGAAAAAGCCTGGGTGGCTGGAAAAGCAATCGTCATGTTTGAAGGCAGACATCAATTTGAAGAACTACCTGTCCTTAGGAAAAGAGGGAAACAGAAAGAAAAAGGATATAGGCATAAGGTTCCTCAGAAGATTTTGAGTAAATGGGAAGCCAGCGTTGGTCTTGCCGAGCAATATGATGTTCCCAAAGGCTCTAAGAACCAAAAGTGTGTCAGTAGCTCAGTCAAGTTGGACAGTGAGGAAGATATGCCATTTGAGGACTGTACAAACGATCCTGATTCAGAACACCTGTTGCTTAATGGCTGCTTGAAGTCTCTGGCTTTTGATTCTGAGCATTCTGCAGATGAAAAGGAAAAGCCCTGTGCCAAGTCTCGAGTTAGAAAAAGCTCTGATAATATAAAAAGGACTAGTGTGAAAAAGGATCTGGTGCCATTTGAATCACGTAAAGAAGAACGGAGGGGGAAAATTCCAGACAACCTTGGCCTAGACTTTATCTCTGGGGGTGTATCTGATAAACAGGCTTCTAATGAACTTTCCAGGATAGCAAACAGCCTCACAGGGTCTAGCACTGCACCAGGAAGTTTCCTCTTTTCTTCCAGTGTACAGAACACTGCTAAGACAGACTTTGAGACTCCAGATTGCGATTCCTTATCAGGTTTGTCTGAGAGTGCTTTAATCTCTAAACATTCTGGAGAGAAAAAGAAACTCCAACCAGGCCAGGTCTGCAGCTCAAAAGTACAGCTCTGCTACGTTGGAGCTGGTGATGAGGAAAAGCGAAGCAATTCTGTCAGTGTGAGTACCACTTCTGATGATGGCTGCAGTGACCTGGATCCTACAGAGCACAACTCAGGATTCCAGAACAGTGTCCTTGGAATTACAGATGCTTTTGATAAAACAGAGAATGCTTTATCGGTGCACAAAAATGAAACACAGTATTCTAGATATCCTGTCACAAACAGGATAAAAGAGAAACAGAAATCCCTCATTACTAATTCCCATGCAGACCATTTAATGGGTTCTACCAAGACAATGGAGCCTGAAACTGCTGAGTTGTCTCAGGTCAATCTTTCTGATCTTAAAATTAGTAGTCCTATTCCCAAACCCCAACCAGAATTTAGGAATGATGGTCTCACTACAAAATTCAGCGCGCCACCAGGCATTCGTAATGAAAATCCACTGACAAAGGGTGGGCTTGCAAATCAAACTCTATTACCTCTGAAATGCAGACAGCCCAAGTTTCGTAGTATAAAATGCAAGCATAAAGAAAGCCCAGCTGTTGCAGAAACCTCAGCTACAAGTGAGGACCTCAGTTTGAAATGCTGTTCTTCTGATACCAATGGCTCTCCTTTGGCCAATATATCCAAAAGTGGGAAAGGAGAGGGGCTAAAACTACTGAACAATATGCATGAGAAAACCAGAGATTCTAGTGACATAGAAACAGCAGTGGTGAAGCACGTTCTTTCGGAACTGAAGGAGCTCTCGTACAGATCATTAAGTGAAGACGTAAGTGATTCTGGAACGGCAAAGGCATCAAAGCCATTACTGTTTTCTTCTGCTTCTAGTCAGAATCATATACCAATTGAACCAGATTACAAGTTTAGCACATTGCTGATGATGCTGAAGGATATGCATGACAGTAAGACAAAGGAGCAGCGGTTAATGACTGCTCAAAATCTGGCTTCCTACAGGACTCCAGATCGTGGGGACTGTTCTTCTGGTAGCCCTGTAGGGACATCAAAAGTTTTGGTGTTAGGAAGCTCCACACCCAATTCTGAAAAGCCTGGAGATAGCACTCAGGACTCAGTTCACCAGAGTCCTGGTGGGGGTGACTCTGCCTTGTCTGGAGAGTTGTCTTCTTCCCTGTCCAGCTTAGCTTCTGACAAAAGAGAGCTCCCTGCTTGTGGTAAAATTCGCTCTAACTGTATCCCAAGGCGCAACTGTGGCCGAGCAAAGCCATCATCCAAGTTGAGAGAAACCATTTCAGCCCAGATGGTAAAACCTTCAGTAAACCCAAAAGCCTTAAAGACTGAGCGGAAGAGAAAGTTCAGCCGACTTCCAGCTGTGACACTTGCTGCTAACAGACTGGGAAACAAAGAAAGTGGATCAGTGAATGGCCCATCCAGGGGTGGGGCTGAAGATCCTGGTAAAGAAGAGCCTCTGCAACAAATGGACCTTTTAAGAAATGAAGACACACATTTTTCAGATGTACATTTTGATAGCAAGGCTAAACAATCGGACCCTGATAAAAATCTTGAAAAAGAACCTTCTTTTGAGAACAGAAAAGGCCCAGAGTTGGGCTCTGAAATGAACACTGAGAATGATGAACTCCATGGTGTTAATCAGGTGGTGCCTAAAAAGCGGTGGCAGCGATTAAACCAAAGGCGCCCTAAGCCCGGAAAGCGTGCTAACAGATTTAGGGAGAAAGAAAACTCGGAGGGTGCTTTTGGAGTCTTACTTCCTGCTGACGCTGTGCAGAAGGCCCGGGAAGACTACTTAGAACAAAGAGCTCCTCCTACAAGTAAACCTGAGGACTCAGCAGCAGATCCCAATCATGGCAGCCACTCTGAATCGGTTGCGCCTCGGCTGAATGTTTGTGAGAAGTCCAGTGTTGGCATGGGTGATGTAGAAAAGGAGACAGGAATTCCCAGTTTGATGCCACAGACCAAGCTCCCTGAGCCAGCTATTCGGTCAGAGAAGAAACGCCTCAGGAAGCCGAGCAAGTGGCTTCTGGAATATACAGAAGAATATGATCAGATATTTGCTCCTAAGAAAAAACAAAAGAAGGTACAGGAACAAGTGCATAAGGTAAGTTCGCGCTGTGAAGACGAAAGCCTTCTTGCCCGATGTCAACCTAGTGCTCAGAACAAGCAGGTGGATGAGAATTCTTTGATTTCAACTAAAGAAGAGCCTCCAGTTCTTGAACGAGAGGCTCCATTTTTGGAAGGGCCATTGGCTCAGTCAGATCTTGGAGTTACACATGCTGAGTTGCCACAGCTGACCTTGTCTGTTCCTGTGGCTCCAGAAGCCTCTCCGCGGCCTGCCCTTGAGTCTGAGGAATTGCTCGTTAAGACACCAGGAAATTATGAAAGTAAGCGTCAAAGAAAACCAACTAAGAAACTTCTTGAATCTAATGATTTAGACCCTGGATTTATGCCCAAGAAGGGTGACCTTGGCCTTTCTAGAAAGTGCTTTGAAGCCAGTCGCTCGGGAAATGGTATTGTTGAATCACGGGCTACATCTCATTTGAAAGAGTTCAGTGGAGGCACTACCAAGATCTTTGATAAACCAAGGAAACGGAAACGGCAGAGGCTTGTCACAGCCAGAGTGCACTATAAAAAAGTGAAGAAGGAGGACTTAACAAAAGACACACCCAGCTCGGAGGGAGAACTGCTGATTCACAGGACTGCTGCCAGCCCCAAGGAGATTCTTGAAGAGGGTGTAGAACATGATCCTGGGATGTCTGCATCCAAGAAACTGCAGGTTGAAAGAGGCGGAGGAGCGGCACTCAAGGAGAATGTGTGTCAGTGTCAACCGAAGAAAAAGTCTACACCACTGAAATATGAAGTTGGAGATCTTATTTGGGCAAAATTCAAGAGACGCCCTTGGTGGCCCTGCAGGATCTGTTCTGATCCATTGATTAATACACACTCAAAAATGAAAGTTGCCAATAGGAGGCCATATCGCGAATACTACGTAGAGGCTTTTGGAGACCCTTCTGAAAAAGCCTGGGTGGCTGGAAAAGCAATCGTCATGTTTGAAGGCAGACATCAATTTGAAGAACTACCTGTCCTTAGGAAAAGAGGGAAACAGAAAGAAAAAGGATATAGGCATAAGGTTCCTCAGAAGATTTTGAGTAAATGGGAAGCCAGCGTTGGTCTTGCCGAGCAATATGATGTTCCCAAAGGCTCTAAGAACCAAAAGTGTGTCAGTAGCTCAGTCAAGTTGGACAGTGAGGAAGATATGCCATTTGAGGACTGTACAAACGATCCTGATTCAGAACACCTGTTGCTTAATGGCTGCTTGAAGTCTCTGGCTTTTGATTCTGAGCATTCTGCAGATGAAAAGGAAAAGCCCTGTGCCAAGTCTCGAGTTAGAAAAAGCTCTGATAATATAAAAAGGACTAGTGTGAAAAAGGATCTGGTGCCATTTGAATCACGTAAAGAAGAACGGAGGGGGAAAATTCCAGACAACCTTGGCCTAGACTTTATCTCTGGGGGTGTATCTGATAAACAGGCTTCTAATGAACTTTCCAGGATAGCAAACAGCCTCACAGGGTCTAGCACTGCACCAGGAAGTTTCCTCTTTTCTTCCAGTGTACAGAACACTGCTAAGACAGACTTTGAGACTCCAGATTGCGATTCCTTATCAGGTTTGTCTGAGAGTGCTTTAATCTCTAAACATTCTGGAGAGAAAAAGAAACTCCAACCAGGCCAGGTCTGCAGCTCAAAAGTACAGCTCTGCTACGTTGGAGCTGGTGATGAGGAAAAGCGAAGCAATTCTGTCAGTGTGAGTACCACTTCTGATGATGGCTGCAGTGACCTGGATCCTACAGAGCACAACTCAGGATTCCAGAACAGTGTCCTTGGAATTACAGATGCTTTTGATAAAACAGAGAATGCTTTATCGGTGCACAAAAATGAAACACAGTATTCTAGATATCCTGTCACAAACAGGATAAAAGAGAAACAGAAATCCCTCATTACTAATTCCCATGCAGACCATTTAATGGGTTCTACCAAGACAATGGAGCCTGAAACTGCTGAGTTGTCTCAGGTCAATCTTTCTGATCTTAAAATTAGTAGTCCTATTCCCAAACCCCAACCAGAATTTAGGAATGATGGTCTCACTACAAAATTCAGCGCGCCACCAGGCATTCGTAATGAAAATCCACTGACAAAGGGTGGGCTTGCAAATCAAACTCTATTACCTCTGAAATGCAGACAGCCCAAGTTTCGTAGTATAAAATGCAAGCATAAAGAAAGCCCAGCTGTTGCAGAAACCTCAGCTACAAGTGAGGACCTCAGTTTGAAATGCTGTTCTTCTGATACCAATGGCTCTCCTTTGGCCAATATATCCAAAAGTGGGAAAGGAGAGGGGCTAAAACTACTGAACAATATGCATGAGAAAACCAGAGATTCTAGTGACATAGAAACAGCAGTGGTGAAGCACGTTCTTTCGGAACTGAAGGAGCTCTCGTACAGATCATTAAGTGAAGACGTAAGTGATTCTGGAACGGCAAAGGCATCAAAGCCATTACTGTTTTCTTCTGCTTCTAGTCAGAATCATATACCAATTGAACCAGATTACAAGTTTAGCACATTGCTGATGATGCTGAAGGATATGCATGACAGTAAGACAAAGGAGCAGCGGTTAATGACTGCTCAAAATCTGGCTTCCTACAGGACTCCAGATCGTGGGGACTGTTCTTCTGGTAGCCCTGTAGGGACATCAAAAGTTTTGGTGTTAGGAAGCTCCACACCCAATTCTGAAAAGCCTGGAGATAGCACTCAGGACTCAGTTCACCAGAGTCCTGGTGGGGGTGACTCTGCCTTGTCTGGAGAGTTGTCTTCTTCCCTGTCCAGCTTAGCTTCTGACAAAAGAGAGCTCCCTGCTTGTGGTAAAATTCGCTCTAACTGTATCCCAAGGCGCAACTGTGGCCGAGCAAAGCCATCATCCAAGTTGAGAGAAACCATTTCAGCCCAGATGGTAAAACCTTCAGTAAACCCAAAAGCCTTAAAGACTGAGCGGAAGAGAAAGTTCAGCCGACTTCCAGCTGTGACACTTGCTGCTAACAGACTGGGAAACAAAGAAAGTGGATCAGTGAATGGCCCATCCAGGGGTGGGGCTGAAGATCCTGGTAAAGAAGAGCCTCTGCAACAAATGGACCTTTTAAGAAATGAAGACACACATTTTTCAGATGTACATTTTGATAGCAAGGCTAAACAATCGGACCCTGATAAAAATCTTGAAAAAGAACCTTCTTTTGAGAACAGAAAAGGCCCAGAGTTGGGCTCTGAAATGAACACTGAGAATGATGAACTCCATGGTGTTAATCAGGTGGTGCCTAAAAAGCGGTGGCAGCGATTAAACCAAAGGCGCCCTAAGCCCGGAAAGCGTGCTAACAGATTTAGGGAGAAAGAAAACTCGGAGGGTGCTTTTGGAGTCTTACTTCCTGCTGACGCTGTGCAGAAGGCCCGGGAAGACTACTTAGAACAAAGAGCTCCTCCTACAAGTAAACCTGAGGACTCAGCAGCAGATCCCAATCATGGCAGCCACTCTGAATCGGTTGCGCCTCGGCTGAATGTTTGTGAGAAGTCCAGTGTTGGCATGGGTGATGTAGAAAAGGAGACAGGAATTCCCAGTTTGATGCCACAGACCAAGCTCCCTGAGCCAGCTATTCGGTCAGAGAAGAAACGCCTCAGGAAGCCGAGCAAGTGGCTTCTGGAATATACAGAAGAATATGATCAGATATTTGCTCCTAAGAAAAAACAAAAGAAGGTACAGGAACAAGTGCATAAGGTAAGTTCGCGCTGTGAAGACGAAAGCCTTCTTGCCCGATGTCAACCTAGTGCTCAGAACAAGCAGGTGGATGAGAATTCTTTGATTTCAACTAAAGAAGAGCCTCCAGTTCTTGAACGAGAGGCTCCATTTTTGGAAGGGCCATTGGCTCAGTCAGATCTTGGAGTTACACATGCTGAGTTGCCACAGCTGACCTTGTCTGTTCCTGTGGCTCCAGAAGCCTCTCCGCGGCCTGCCCTTGAGTCTGAGGAATTGCTCGTTAAGACACCAGGAAATTATGAAAGTAAGCGTCAAAGAAAACCAACTAAGAAACTTCTTGAATCTAATGATTTAGACCCTGGATTTATGCCCAAGAAGGGTGACCTTGGCCTTTCTAGAAAGTGCTTTGAAGCCAGTCGCTCGGGAAATGGTATTGTTGAATCACGGGCTACATCTCATTTGAAAGAGTTCAGTGGAGGCACTACCAAGATCTTTGATAAACCAAGGAAACGGAAACGGCAGAGGCTTGTCACAGCCAGAGTGCACTATAAAAAAGTGAAGAAGGAGGACTTAACAAAAGACACACCCAGCTCGGAGGGAGAACTGCTGATTCACAGGACTGCTGCCAGCCCCAAGGAGATTCTTGAAGAGGGTGTAGAACATGATCCTGGGATGTCTGCATCCAAGAAACTGCAGGTTGAAAGAGGCGGAGGAGCGGCACTCAAGGAGAATGTGTGTCAG
Peptide sequence:
MKVANRRPYREYYVEAFGDPSEKAWVAGKAIVMFEGRHQFEELPVLRKRGKQKEKGYRHKVPQKILSKWEASVGLAEQYDVPKGSKNQKCVSSSVKLDSEEDMPFEDCTNDPDSEHLLLNGCLKSLAFDSEHSADEKEKPCAKSRVRKSSDNIKRTSVKKDLVPFESRKEERRGKIPDNLGLDFISGGVSDKQASNELSRIANSLTGSSTAPGSFLFSSSVQNTAKTDFETPDCDSLSGLSESALISKHSGEKKKLQPGQVCSSKVQLCYVGAGDEEKRSNSVSVSTTSDDGCSDLDPTEHNSGFQNSVLGITDAFDKTENALSVHKNETQYSRYPVTNRIKEKQKSLITNSHADHLMGSTKTMEPETAELSQVNLSDLKISSPIPKPQPEFRNDGLTTKFSAPPGIRNENPLTKGGLANQTLLPLKCRQPKFRSIKCKHKESPAVAETSATSEDLSLKCCSSDTNGSPLANISKSGKGEGLKLLNNMHEKTRDSSDIETAVVKHVLSELKELSYRSLSEDVSDSGTAKASKPLLFSSASSQNHIPIEPDYKFSTLLMMLKDMHDSKTKEQRLMTAQNLASYRTPDRGDCSSGSPVGTSKVLVLGSSTPNSEKPGDSTQDSVHQSPGGGDSALSGELSSSLSSLASDKRELPACGKIRSNCIPRRNCGRAKPSSKLRETISAQMVKPSVNPKALKTERKRKFSRLPAVTLAANRLGNKESGSVNGPSRGGAEDPGKEEPLQQMDLLRNEDTHFSDVHFDSKAKQSDPDKNLEKEPSFENRKGPELGSEMNTENDELHGVNQVVPKKRWQRLNQRRPKPGKRANRFREKENSEGAFGVLLPADAVQKAREDYLEQRAPPTSKPEDSAADPNHGSHSESVAPRLNVCEKSSVGMGDVEKETGIPSLMPQTKLPEPAIRSEKKRLRKPSKWLLEYTEEYDQIFAPKKKQKKVQEQVHKVSSRCEDESLLARCQPSAQNKQVDENSLISTKEEPPVLEREAPFLEGPLAQSDLGVTHAELPQLTLSVPVAPEASPRPALESEELLVKTPGNYESKRQRKPTKKLLESNDLDPGFMPKKGDLGLSRKCFEASRSGNGIVESRATSHLKEFSGGTTKIFDKPRKRKRQRLVTARVHYKKVKKEDLTKDTPSSEGELLIHRTAASPKEILEEGVEHDPGMSASKKLQVERGGGAALKENVCQCQPKKKSTPLKYEVGDLIWAKFKRRPWWPCRICSDPLINTHSKMKVANRRPYREYYVEAFGDPSEKAWVAGKAIVMFEGRHQFEELPVLRKRGKQKEKGYRHKVPQKILSKWEASVGLAEQYDVPKGSKNQKCVSSSVKLDSEEDMPFEDCTNDPDSEHLLLNGCLKSLAFDSEHSADEKEKPCAKSRVRKSSDNIKRTSVKKDLVPFESRKEERRGKIPDNLGLDFISGGVSDKQASNELSRIANSLTGSSTAPGSFLFSSSVQNTAKTDFETPDCDSLSGLSESALISKHSGEKKKLQPGQVCSSKVQLCYVGAGDEEKRSNSVSVSTTSDDGCSDLDPTEHNSGFQNSVLGITDAFDKTENALSVHKNETQYSRYPVTNRIKEKQKSLITNSHADHLMGSTKTMEPETAELSQVNLSDLKISSPIPKPQPEFRNDGLTTKFSAPPGIRNENPLTKGGLANQTLLPLKCRQPKFRSIKCKHKESPAVAETSATSEDLSLKCCSSDTNGSPLANISKSGKGEGLKLLNNMHEKTRDSSDIETAVVKHVLSELKELSYRSLSEDVSDSGTAKASKPLLFSSASSQNHIPIEPDYKFSTLLMMLKDMHDSKTKEQRLMTAQNLASYRTPDRGDCSSGSPVGTSKVLVLGSSTPNSEKPGDSTQDSVHQSPGGGDSALSGELSSSLSSLASDKRELPACGKIRSNCIPRRNCGRAKPSSKLRETISAQMVKPSVNPKALKTERKRKFSRLPAVTLAANRLGNKESGSVNGPSRGGAEDPGKEEPLQQMDLLRNEDTHFSDVHFDSKAKQSDPDKNLEKEPSFENRKGPELGSEMNTENDELHGVNQVVPKKRWQRLNQRRPKPGKRANRFREKENSEGAFGVLLPADAVQKAREDYLEQRAPPTSKPEDSAADPNHGSHSESVAPRLNVCEKSSVGMGDVEKETGIPSLMPQTKLPEPAIRSEKKRLRKPSKWLLEYTEEYDQIFAPKKKQKKVQEQVHKVSSRCEDESLLARCQPSAQNKQVDENSLISTKEEPPVLEREAPFLEGPLAQSDLGVTHAELPQLTLSVPVAPEASPRPALESEELLVKTPGNYESKRQRKPTKKLLESNDLDPGFMPKKGDLGLSRKCFEASRSGNGIVESRATSHLKEFSGGTTKIFDKPRKRKRQRLVTARVHYKKVKKEDLTKDTPSSEGELLIHRTAASPKEILEEGVEHDPGMSASKKLQVERGGGAALKENVCQ
IRESfinder result
IRESfinder score
0.566314271
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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