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mmu_circNr3c2_1899
Basic information of circular RNA
PanCircBase ID:
mmu_circNr3c2_1899
mm39_Chr. Position ID:
chr8|77634898|77812295|+
Gene name:
Nr3c2
Transcript:
ENSMUST00000109913.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,177257
Genomic length:
177397
Exon/intron sizes in nt:
17,59,140
Flanking exon/introns:
chr8:77626888-77634898|chr8:77812295-77881830
Splice length:
1899
Other database IDs:
CIRCpedia: MMU_CIRCpedia_215981, circAtlas: mmu-Nr3c2_0003
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_147715
Human Ortholog IDs:
Mature spliced Sequence:
CTATGGAAACCAAAGGCTACCACAGTCTCCCTGAAGGCCTAGATATGGAAAGGCGCTGGAGTCAAGTGTCTCAGACCTTGGAGCGTTCTTCTCTTGGACCTGCAGAGAGGACCAATGAGAACAGCTACATGGAGATTGTCAACGTCAGCTGCGTTTCCGGTGCTACTCCGAACAACAGTACTCAAGGGAGCAGCAAAGAAAAACACGAATTACTCCCTTGTCTTCAGCAAGACAATAGTCGGTCTGGGATTTTGCCATCAGATATTAAAACTGAGCTGGAATCCAAGGAACTTTCAGCCACGGTGGCTGAGTCCATGGGTTTATACATGGATTCTGTGAGAGATGCCGAGTACACTTATGATCAGCAAAACCAACAAGGAAGCCTGAGCCCGGCAAAGATTTATCAAAACATGGAGCAGCTGGTGAAGTTTTACAAAGAGAATGGTCACAGGTCCTCCACACTGAGTGCTATAAGCAGGCCTTTGAGGTCATTCATGCCTGACTCTGGGACCTCCATGAATGGTGGGGCCTTGCGTGCCATCGTTAAGAGCCCAATCATCTGTCATGAGAAGAGCCCCTCTGTTTGCAGCCCGCTCAACATGCCGTCTTCAGTATGCAGCCCCGCGGGCATCAACTCCATGTCCTCCTCCACAGCTAGCTTTGGCAGTTTCCCAGTGCACAGTCCCATCACTCAAGGAACCTCACTGACATGCTCCCCCAGTGTTGAAAATAGAGGCTCAAGGTCACACAGCCCCGTACATGCGAGCAATGTGGGCTCTCCTCTTTCAAGTCCATTAAGCAGCATGAAATCCCCAATTTCCAGCCCTCCAAGTCACTGCAGTGTAAAATCTCCAGTATCCAGTCCAAACAATGTCCCTCTGCGCTCCTCTGTGTCAAGCCCGGCAAATCTTAACAATTCAAGGTGCTCTGTTTCCAGCCCTTCCAACACCAACAATAGATCTACACTCTCCAGCCCGACAGCTAGCACAGTGGGGTCCATTGGCAGCCCCATCAGCAATGCCTTCAGCTATACCACTTCAGGCGCTTCGGCTGGAGCCGGTGCCATCCAGGATATGGTTCCCAGTCCAGACACCCACGAGAAAGGTGCTCACGACGTTCCTTTCCCTAAGACAGAGGAAGTCGAGAAGGCCATTTCCAATGGTGTGACTGGTCAGCTCAACATTGTCCAGTACATAAAACCAGAACCAGATGGGGCTTTCAGCAGTTCCTGCCTAGGAGGAAACAACAAAATCAACCCCAGTTCTCCGTTCTCTGTACCAATAAAGCAAGAGTCAAGCAAGCACTCATGTTCAGGCGCCTCTTTTAAAGGGAACCCCACAGTCAACCCATTTCCATTCATGGATGGCTCGTACTTTTCTTTTATGGATGATAAAGACTATTATTCCCTATCAGGAATCTTAGGACCACCTGTGCCCGGCTTTGATAGTAGCTGTGAAGGCAGTGCGTTCCCGGGGGGGATTAAGCAAGAACCAGATGATGGGAGCTATTTCCCTGAAACCAGCATCCCATCATCTGCCATCATTGGTGTGAATTCAGGTGGACAGTCCTTTCACTACCGGATTGGTGCTCAAGGTACAATATCTTTATCACGGTCACCTAGAGACCAATCTTTCCAACACTTGAGTTCCTTTCCGCCTGTCAATGCATTAGTGGAGTCATGGAAACCACACGGTGACCTGTCATCTAGGAGAAGTGATGGGTACCCGGTCCTAGAGTACATTCCAGAAAACGTGTCAAGCTCTACTTTACGAAGTGTTTCTACTGGATCCTCAAGACCTTCCAAGATCTGCTTGGTGTGTGGAGATGAGGCTTCTGGGTGTCACTATGGGGTAGTGACCTGCGGCAGCTGCAAAGTCTTCTTCAAAAGAGCCGTGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGTGTGTGGAGATGAGGC
59.96
GACTCCAGCGCCTTTCCATA
59.82
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGTGTGTGGAGATGAGGC
59.96
TGAGACACTTGACTCCAGCG
59.68
161
PCR template sequence:
TCCAAGATCTGCTTGGTGTGTGGAGATGAGGCTTCTGGGTGTCACTATGGGGTAGTGACCTGCGGCAGCTGCAAAGTCTTCTTCAAAAGAGCCGTGGAAGCTATGGAAACCAAAGGCTACCACAGTCTCCCTGAAGGCCTAGATATGGAAAGGCGCTGGAGTCAAGTGTCTCAGACCTTGGAGCGTTCTTCTCTTGGACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-29b-2-5p(3), mmu-miR-29b-1-5p(2), mmu-miR-5101(2), mmu-miR-3105-3p(2), mmu-miR-9-5p(1), mmu-miR-135a-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-184-3p(1), mmu-miR-320-3p(1), mmu-miR-183-5p(1), mmu-miR-324-3p(1), mmu-miR-680(1), mmu-miR-207(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGCCGTGGAAGCTATGGAAACCAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNR3C2_1899_ORF_1
0.8429
0.12457721
1
3795
ORF sequence:
ATGGAAACCAAAGGCTACCACAGTCTCCCTGAAGGCCTAGATATGGAAAGGCGCTGGAGTCAAGTGTCTCAGACCTTGGAGCGTTCTTCTCTTGGACCTGCAGAGAGGACCAATGAGAACAGCTACATGGAGATTGTCAACGTCAGCTGCGTTTCCGGTGCTACTCCGAACAACAGTACTCAAGGGAGCAGCAAAGAAAAACACGAATTACTCCCTTGTCTTCAGCAAGACAATAGTCGGTCTGGGATTTTGCCATCAGATATTAAAACTGAGCTGGAATCCAAGGAACTTTCAGCCACGGTGGCTGAGTCCATGGGTTTATACATGGATTCTGTGAGAGATGCCGAGTACACTTATGATCAGCAAAACCAACAAGGAAGCCTGAGCCCGGCAAAGATTTATCAAAACATGGAGCAGCTGGTGAAGTTTTACAAAGAGAATGGTCACAGGTCCTCCACACTGAGTGCTATAAGCAGGCCTTTGAGGTCATTCATGCCTGACTCTGGGACCTCCATGAATGGTGGGGCCTTGCGTGCCATCGTTAAGAGCCCAATCATCTGTCATGAGAAGAGCCCCTCTGTTTGCAGCCCGCTCAACATGCCGTCTTCAGTATGCAGCCCCGCGGGCATCAACTCCATGTCCTCCTCCACAGCTAGCTTTGGCAGTTTCCCAGTGCACAGTCCCATCACTCAAGGAACCTCACTGACATGCTCCCCCAGTGTTGAAAATAGAGGCTCAAGGTCACACAGCCCCGTACATGCGAGCAATGTGGGCTCTCCTCTTTCAAGTCCATTAAGCAGCATGAAATCCCCAATTTCCAGCCCTCCAAGTCACTGCAGTGTAAAATCTCCAGTATCCAGTCCAAACAATGTCCCTCTGCGCTCCTCTGTGTCAAGCCCGGCAAATCTTAACAATTCAAGGTGCTCTGTTTCCAGCCCTTCCAACACCAACAATAGATCTACACTCTCCAGCCCGACAGCTAGCACAGTGGGGTCCATTGGCAGCCCCATCAGCAATGCCTTCAGCTATACCACTTCAGGCGCTTCGGCTGGAGCCGGTGCCATCCAGGATATGGTTCCCAGTCCAGACACCCACGAGAAAGGTGCTCACGACGTTCCTTTCCCTAAGACAGAGGAAGTCGAGAAGGCCATTTCCAATGGTGTGACTGGTCAGCTCAACATTGTCCAGTACATAAAACCAGAACCAGATGGGGCTTTCAGCAGTTCCTGCCTAGGAGGAAACAACAAAATCAACCCCAGTTCTCCGTTCTCTGTACCAATAAAGCAAGAGTCAAGCAAGCACTCATGTTCAGGCGCCTCTTTTAAAGGGAACCCCACAGTCAACCCATTTCCATTCATGGATGGCTCGTACTTTTCTTTTATGGATGATAAAGACTATTATTCCCTATCAGGAATCTTAGGACCACCTGTGCCCGGCTTTGATAGTAGCTGTGAAGGCAGTGCGTTCCCGGGGGGGATTAAGCAAGAACCAGATGATGGGAGCTATTTCCCTGAAACCAGCATCCCATCATCTGCCATCATTGGTGTGAATTCAGGTGGACAGTCCTTTCACTACCGGATTGGTGCTCAAGGTACAATATCTTTATCACGGTCACCTAGAGACCAATCTTTCCAACACTTGAGTTCCTTTCCGCCTGTCAATGCATTAGTGGAGTCATGGAAACCACACGGTGACCTGTCATCTAGGAGAAGTGATGGGTACCCGGTCCTAGAGTACATTCCAGAAAACGTGTCAAGCTCTACTTTACGAAGTGTTTCTACTGGATCCTCAAGACCTTCCAAGATCTGCTTGGTGTGTGGAGATGAGGCTTCTGGGTGTCACTATGGGGTAGTGACCTGCGGCAGCTGCAAAGTCTTCTTCAAAAGAGCCGTGGAAGCTATGGAAACCAAAGGCTACCACAGTCTCCCTGAAGGCCTAGATATGGAAAGGCGCTGGAGTCAAGTGTCTCAGACCTTGGAGCGTTCTTCTCTTGGACCTGCAGAGAGGACCAATGAGAACAGCTACATGGAGATTGTCAACGTCAGCTGCGTTTCCGGTGCTACTCCGAACAACAGTACTCAAGGGAGCAGCAAAGAAAAACACGAATTACTCCCTTGTCTTCAGCAAGACAATAGTCGGTCTGGGATTTTGCCATCAGATATTAAAACTGAGCTGGAATCCAAGGAACTTTCAGCCACGGTGGCTGAGTCCATGGGTTTATACATGGATTCTGTGAGAGATGCCGAGTACACTTATGATCAGCAAAACCAACAAGGAAGCCTGAGCCCGGCAAAGATTTATCAAAACATGGAGCAGCTGGTGAAGTTTTACAAAGAGAATGGTCACAGGTCCTCCACACTGAGTGCTATAAGCAGGCCTTTGAGGTCATTCATGCCTGACTCTGGGACCTCCATGAATGGTGGGGCCTTGCGTGCCATCGTTAAGAGCCCAATCATCTGTCATGAGAAGAGCCCCTCTGTTTGCAGCCCGCTCAACATGCCGTCTTCAGTATGCAGCCCCGCGGGCATCAACTCCATGTCCTCCTCCACAGCTAGCTTTGGCAGTTTCCCAGTGCACAGTCCCATCACTCAAGGAACCTCACTGACATGCTCCCCCAGTGTTGAAAATAGAGGCTCAAGGTCACACAGCCCCGTACATGCGAGCAATGTGGGCTCTCCTCTTTCAAGTCCATTAAGCAGCATGAAATCCCCAATTTCCAGCCCTCCAAGTCACTGCAGTGTAAAATCTCCAGTATCCAGTCCAAACAATGTCCCTCTGCGCTCCTCTGTGTCAAGCCCGGCAAATCTTAACAATTCAAGGTGCTCTGTTTCCAGCCCTTCCAACACCAACAATAGATCTACACTCTCCAGCCCGACAGCTAGCACAGTGGGGTCCATTGGCAGCCCCATCAGCAATGCCTTCAGCTATACCACTTCAGGCGCTTCGGCTGGAGCCGGTGCCATCCAGGATATGGTTCCCAGTCCAGACACCCACGAGAAAGGTGCTCACGACGTTCCTTTCCCTAAGACAGAGGAAGTCGAGAAGGCCATTTCCAATGGTGTGACTGGTCAGCTCAACATTGTCCAGTACATAAAACCAGAACCAGATGGGGCTTTCAGCAGTTCCTGCCTAGGAGGAAACAACAAAATCAACCCCAGTTCTCCGTTCTCTGTACCAATAAAGCAAGAGTCAAGCAAGCACTCATGTTCAGGCGCCTCTTTTAAAGGGAACCCCACAGTCAACCCATTTCCATTCATGGATGGCTCGTACTTTTCTTTTATGGATGATAAAGACTATTATTCCCTATCAGGAATCTTAGGACCACCTGTGCCCGGCTTTGATAGTAGCTGTGAAGGCAGTGCGTTCCCGGGGGGGATTAAGCAAGAACCAGATGATGGGAGCTATTTCCCTGAAACCAGCATCCCATCATCTGCCATCATTGGTGTGAATTCAGGTGGACAGTCCTTTCACTACCGGATTGGTGCTCAAGGTACAATATCTTTATCACGGTCACCTAGAGACCAATCTTTCCAACACTTGAGTTCCTTTCCGCCTGTCAATGCATTAGTGGAGTCATGGAAACCACACGGTGACCTGTCATCTAGGAGAAGTGATGGGTACCCGGTCCTAGAGTACATTCCAGAAAACGTGTCAAGCTCTACTTTACGAAGTGTTTCTACTGGATCCTCAAGACCTTCCAAGATCTGCTTGGTGTGTGGAGATGAGGCTTCTGGGTGTCACTATGGGGTAGTGACCTGCGGCAGCTGCAAAGTCTTCTTCAAAAGAGCCGTGGAA
Peptide sequence:
METKGYHSLPEGLDMERRWSQVSQTLERSSLGPAERTNENSYMEIVNVSCVSGATPNNSTQGSSKEKHELLPCLQQDNSRSGILPSDIKTELESKELSATVAESMGLYMDSVRDAEYTYDQQNQQGSLSPAKIYQNMEQLVKFYKENGHRSSTLSAISRPLRSFMPDSGTSMNGGALRAIVKSPIICHEKSPSVCSPLNMPSSVCSPAGINSMSSSTASFGSFPVHSPITQGTSLTCSPSVENRGSRSHSPVHASNVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSSVSSPANLNNSRCSVSSPSNTNNRSTLSSPTASTVGSIGSPISNAFSYTTSGASAGAGAIQDMVPSPDTHEKGAHDVPFPKTEEVEKAISNGVTGQLNIVQYIKPEPDGAFSSSCLGGNNKINPSSPFSVPIKQESSKHSCSGASFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGFDSSCEGSAFPGGIKQEPDDGSYFPETSIPSSAIIGVNSGGQSFHYRIGAQGTISLSRSPRDQSFQHLSSFPPVNALVESWKPHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFKRAVEAMETKGYHSLPEGLDMERRWSQVSQTLERSSLGPAERTNENSYMEIVNVSCVSGATPNNSTQGSSKEKHELLPCLQQDNSRSGILPSDIKTELESKELSATVAESMGLYMDSVRDAEYTYDQQNQQGSLSPAKIYQNMEQLVKFYKENGHRSSTLSAISRPLRSFMPDSGTSMNGGALRAIVKSPIICHEKSPSVCSPLNMPSSVCSPAGINSMSSSTASFGSFPVHSPITQGTSLTCSPSVENRGSRSHSPVHASNVGSPLSSPLSSMKSPISSPPSHCSVKSPVSSPNNVPLRSSVSSPANLNNSRCSVSSPSNTNNRSTLSSPTASTVGSIGSPISNAFSYTTSGASAGAGAIQDMVPSPDTHEKGAHDVPFPKTEEVEKAISNGVTGQLNIVQYIKPEPDGAFSSSCLGGNNKINPSSPFSVPIKQESSKHSCSGASFKGNPTVNPFPFMDGSYFSFMDDKDYYSLSGILGPPVPGFDSSCEGSAFPGGIKQEPDDGSYFPETSIPSSAIIGVNSGGQSFHYRIGAQGTISLSRSPRDQSFQHLSSFPPVNALVESWKPHGDLSSRRSDGYPVLEYIPENVSSSTLRSVSTGSSRPSKICLVCGDEASGCHYGVVTCGSCKVFFKRAVE
IRESfinder result
IRESfinder score
0.620026661
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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