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mmu_circNcor1_3917
Basic information of circular RNA
PanCircBase ID:
mmu_circNcor1_3917
mm39_Chr. Position ID:
chr11|62240178|62329341|-
Gene name:
Ncor1
Transcript:
ENSMUST00000018645.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
27
Exon/intron indexes:
28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,2025,3881,5018,5218,9502,17611,19941,23723,27282,29162,32055,33808,35365,40338,41626,43152,45785,48912,51848,54446,55057,61467,70245,73522,84210,88985
Genomic length:
89163
Exon/intron sizes in nt:
14,11,69,10,11,02,11,80,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:62236144-62240178|chr11:62329341-62347973
Splice length:
3917
Other database IDs:
circAtlas: mmu-Ncor1_0137
Human Ortholog IDs:
Mature spliced Sequence:
GTTGCTTCCTAGAAACATGGTTGTTTGTTGGACTTGATCTCACAGCCCAGTGAGGACGTCTTTACTGATAATGTCAAGTTCAGGTTACCCTCCCAACCAAGGAGCTTTCAGCACAGAGCAAAGTCGTTATCCTTCACATTCTGTCCAGTATACCTTTCCCAGTACCCGACACCAGCAGGAATTTGCAGTTCCTGACTACCGCTCTTCTCATATTGAAGTTAGCCAGGCATCACAGCTTTTACAGCAGCAGCAGCAGCAGCAGCAGCTTCGAAGACGACCTTCCTTGCTTTCAGAATTTCACCCGGGTTCTGACAGGCCTCAAGAAAGGAGAACTGGATATGAACAGTTTCACTCAGGACCCTCACCGGTGGATCATGATTCCTTGGAGTCCAAGCGCCCACGCCTGGAGCCAGTTTCTGATGCCCATTTCCAGCGTGTTAGTGCTGCGGTTTTACCTTTAGTTCACTCGCTGCCAGAAGGCTTGAGGTCGTCTGCAGATGCTAAGAAGGATTCAGCATTTGGAAGCAAACATGAAGCTCCATCCTCTCCTTTGGCTGGGCAACCATGTGGAGATGACCAAAATGCTTCACCTTCAAAGCTTTCAAAGGAGGAGTTAATACAGAGTATGGACCGGGTAGACCGAGAGATTGCAAAAGTAGAGCAGCAGATCCTTAAATTGAAAAAGAAACAACAACAGCTAGAAGAAGAAGCAGCTAAGCCCCCTGAACCAGAGAAGCCTGTGTCCCCTCCTCCTGTGGAACAAAAACACCGTAGTATTGTCCAAATTATTTATGATGAGAATCGGAAAAAAGCAGAAGAAGCTCATAAAATATTTGAAGGTCTTGGCCCAAAAGTTGAACTGCCACTCTATAACCAGCCATCAGATACCAAGGTGTACCATGAGAACATCAAGACAAACCAGGTGATGAGGAAAAAACTCATTTTATTTTTTAAAAGAAGAAATCATGCAAGAAAACAAAGGGAACAAAAAATCTGCCAGCGCTATGATCAGCTCATGGAAGCGTGGGAGAAAAAAGTGGACAGAATAGAAAATAATCCCCGGAGGAAAGCAAAAGAAAGCAAAACAAGGGAATACTATGAGAAGCAGTTTCCAGAAATTCGAAAACAAAGAGAACAGCAAGAAAGATTTCAGCGAGTTGGTCAGAGGGGAGCTGGTCTTTCAGCCACCATTGCTAGGAGTGAGCATGAGATTTCTGAAATTATTGATGGTCTTTCTGAACAGGAGAATAATGAGAAGCAAATGCGTCAGCTTTCTGTGATTCCACCTATGATGTTTGATGCAGAACAAAGAAGGGTCAAATTCATCAATATGAATGGGCTGATGGAGGATCCAATGAAGGTTTATAAAGACAGACAGTTTATGAATGTTTGGACTGACCATGAAAAGGAGATCTTTAAGGACAAGTTTATCCAGCATCCAAAAAACTTTGGACTAATTGCATCCTATTTGGAAAGGAAGAGTGTTCCTGATTGTGTTTTATATTACTATTTAACCAAGAAAAATGAGAATTATAAGGCCCTCGTGAGAAGGAATTATGGAAAACGCAGAGGCAGAAATCAGCAGATTGCCCGTCCCTCACAAGAAGAAAAAGTAGAAGAAAAGGAAGAGGATAAAGCAGAAAAAACAGAGAAAAAGGAAGAAGAAAAGAAGGATGATGAAGAAAAAGATGATAAGGAAGACTCTAAAGAAACAACCAAGGAAAAGGACAGAACGGAAGCCACAGCAGAAGAACCTGAAGAAAGAGAGCAGGTCACTCCAAGGGGGCGAAAGACTGCTAACAGCCAAGGCCGCCGGAAGGGCCGGGTCACCAGGTCGATGACAAGTGAAGCTGCAGCTGCCAATGCTGCTGCTGCAGCCACTGAGGAGCCCCCGCCACCCCTGCCGCCACCACCAGAGCCCATTTCTACAGAACCTGTTGAGACTTCAAGATGGACAGAAGAAGAAATGGAAGTTGCTAAAAAAGGCCTGGTAGAACATGGTCGTAACTGGGCAGCCATTGCTAAAATGGTGGGAACTAAAAGTGAAGCCCAGTGCAAAAACTTCTATTTTAACTATAAAAGACGGCATAATCTTGACAACCTTTTGCAGCAACATAAACAGAAAGCTTCACGGAAACCCCGTGAGGAACGAGATGTATCTCAGTGTGAAAGTGTTGCTTCCACTGTTTCTGCCCAAGAGGATGAAGATATTGAAGCCTCAAATGAGGAGGAAAATCCAGAAGATAGTGAAGGTGCTGAAAATAGTTCTGATACAGAAAGTGCTCCCTCTCCTTCACCAGTTGAAGCTGCCAAGTCCAGTGAAGACAGCAGTGAAAATGCTGCTTCTCGAGGAAACACCGAGCCTGTGGCTGAGCTTGAGGCCACCACTGACCCTGCACCCTGTGCATCTCCCTCTTCAGCAGTTCCAACCACAAAACCAGCAGAAAGGGAAAGCGTGGAGGCCCAGGTGACCGACAGCGCCAGTGCTGAGACCGCAGAGCCGATGGACGTAGACCATGAGGAGTGCGGTGCCGAGGGCAGTTCTGTTCTTGATCCACCAGCCCCTACCAAAGCCGACTCCGTGGACCCAGAAATGCAGGTACCAGAAAATACTGCGTCTAAAGGTGAAGGGGATGCCAAGGAAAGAGACTTGGAGAGCACCAGTGAGAAGACAGAGGCTAGAGATGAAGACGTGGTAGTGGCTGAACAGATCGAGAGGCCTGAGCCACAGTCAGACGACGACTCCAGTGCCACTTGCAGTGCGGATGAGGGTGTGGATGGAGAGCCAGAGAGGCAGAGAGTGTTTCCCATGGATGCAAAGCCTTCATTGTTAACTCCTCCTGGATCTATCCTAATCTCATCCCCTATTAAACCAAACCCATTGGATCTGCCACAGCTTCAGCATCGAGCTGCTGTTATTCCACCAATGGTTTCTTGCACTCCATGTAATATACCAATTGGAACGCCCGTAAGTGGCTATGCTCTTTACCAACGGCACATTAAGGCCATGCATGAGTCAGCACTCCTGGAGGAGCAGCGGCAGAGGCAAGAACAGGTAGACTTGGAATGCAGAAGCTCTACAAGCCCATGCAGCACTTCTAAGAGTCCAAACAGGGAGTGGGAAGTCCTCCAACCTGCTCCGCATCAAGTGATAACTAACCTTCCTGAAGGGGTTCGGCTTCCAACAACACGACCAACCAGGCCACCACCTCCCCTCATCCCATCATCTAAAACCACAGTGGCATCAGAAAAACCATCCTTTATAATGGGAGGGTCTATCTCACAGGGAACTCCTGGCACTTACTTGTCTTCTCATAATCAGGCTTATCCACAAGAAGCCCCTAAGCCCTCCGTGGGGTCTATCTCTCTGGGATTGCCCCGGCAGCAGGAGTCTACCAAAGCAGCTCCTTTGACCTACATCAAGCAGGAAGAATTTTCTCCGAGAAGCCAAAACTCACAACCTGAGGGTTTATTGGTCAGAGCGCAGCATGAAGGTGTGGTCAGAGGCACTGCAGGGGCTGTCCAAGAAGGAAGTATAACTCGGGGAACTCCAGCCAGCAAAATCTCAGTGGAGACCATTTCATCGTTGCGGGGCTCTATTACCCAGGGGACCCCAGCTCTGCCCCAGGCTGGAATACCAACAGAGGCTTTGGTGAAGGGACCTGTCTCCAGGATGCCTATTGAAGAAAGCAGTCCTGAGAAGGTCAGAGAGGAAGCTGCATCCAAGGGCCATGTTATCTATGAAGGCAAAAGTGGACATATCTTATCATATGATAATATTAAGAATGCCCGAGAAGGGACTCGGAGTCCAAGAACAGCTCATGAAATGAGTTTAAAAAGAAGCTATGAGGCAGTGGAAGGAAGTATAAAGCAAGGCATGTCGATGAGGGAGTCTCCTGTGTCAGCACCTTTAGAGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGCTATGAGGCAGTGGAAGG
59.16
TAAAGACGTCCTCACTGGGC
59.39
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCTATGAGGCAGTGGAAGG
59.79
TAAAGACGTCCTCACTGGGC
59.39
141
PCR template sequence:
GCTCATGAAATGAGTTTAAAAAGAAGCTATGAGGCAGTGGAAGGAAGTATAAAGCAAGGCATGTCGATGAGGGAGTCTCCTGTGTCAGCACCTTTAGAGGGTTGCTTCCTAGAAACATGGTTGTTTGTTGGACTTGATCTCACAGCCCAGTGAGGACGTCTTTACTGATAATGTCAAGTTCAGGTTACCCTCCCAACCAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-29b-1-5p(3), mmu-miR-335-3p(3), mmu-miR-103-3p(2), mmu-miR-211-5p(2), mmu-miR-138-5p(2), mmu-miR-149-5p(2), mmu-miR-370-3p(2), mmu-miR-107-3p(2), mmu-miR-27a-5p(2), mmu-miR-9-5p(1), mmu-miR-181a-5p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-328-3p(1), mmu-miR-216a-5p(1), mmu-miR-320-3p(1), mmu-miR-324-5p(1), mmu-miR-181b-5p(1), mmu-miR-194-5p(1), mmu-miR-467b-5p(1), mmu-miR-324-3p(1), mmu-miR-301a-3p(1), mmu-miR-190b-5p(1), mmu-miR-129-5p(1), mmu-miR-3065-5p(1), mmu-miR-1904(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCACCTTTAGAGGGTTGCTTCCTAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNCOR1_3917_ORF_1
1.1735
0.182169853
1
3900
ORF sequence:
ATGTCAAGTTCAGGTTACCCTCCCAACCAAGGAGCTTTCAGCACAGAGCAAAGTCGTTATCCTTCACATTCTGTCCAGTATACCTTTCCCAGTACCCGACACCAGCAGGAATTTGCAGTTCCTGACTACCGCTCTTCTCATATTGAAGTTAGCCAGGCATCACAGCTTTTACAGCAGCAGCAGCAGCAGCAGCAGCTTCGAAGACGACCTTCCTTGCTTTCAGAATTTCACCCGGGTTCTGACAGGCCTCAAGAAAGGAGAACTGGATATGAACAGTTTCACTCAGGACCCTCACCGGTGGATCATGATTCCTTGGAGTCCAAGCGCCCACGCCTGGAGCCAGTTTCTGATGCCCATTTCCAGCGTGTTAGTGCTGCGGTTTTACCTTTAGTTCACTCGCTGCCAGAAGGCTTGAGGTCGTCTGCAGATGCTAAGAAGGATTCAGCATTTGGAAGCAAACATGAAGCTCCATCCTCTCCTTTGGCTGGGCAACCATGTGGAGATGACCAAAATGCTTCACCTTCAAAGCTTTCAAAGGAGGAGTTAATACAGAGTATGGACCGGGTAGACCGAGAGATTGCAAAAGTAGAGCAGCAGATCCTTAAATTGAAAAAGAAACAACAACAGCTAGAAGAAGAAGCAGCTAAGCCCCCTGAACCAGAGAAGCCTGTGTCCCCTCCTCCTGTGGAACAAAAACACCGTAGTATTGTCCAAATTATTTATGATGAGAATCGGAAAAAAGCAGAAGAAGCTCATAAAATATTTGAAGGTCTTGGCCCAAAAGTTGAACTGCCACTCTATAACCAGCCATCAGATACCAAGGTGTACCATGAGAACATCAAGACAAACCAGGTGATGAGGAAAAAACTCATTTTATTTTTTAAAAGAAGAAATCATGCAAGAAAACAAAGGGAACAAAAAATCTGCCAGCGCTATGATCAGCTCATGGAAGCGTGGGAGAAAAAAGTGGACAGAATAGAAAATAATCCCCGGAGGAAAGCAAAAGAAAGCAAAACAAGGGAATACTATGAGAAGCAGTTTCCAGAAATTCGAAAACAAAGAGAACAGCAAGAAAGATTTCAGCGAGTTGGTCAGAGGGGAGCTGGTCTTTCAGCCACCATTGCTAGGAGTGAGCATGAGATTTCTGAAATTATTGATGGTCTTTCTGAACAGGAGAATAATGAGAAGCAAATGCGTCAGCTTTCTGTGATTCCACCTATGATGTTTGATGCAGAACAAAGAAGGGTCAAATTCATCAATATGAATGGGCTGATGGAGGATCCAATGAAGGTTTATAAAGACAGACAGTTTATGAATGTTTGGACTGACCATGAAAAGGAGATCTTTAAGGACAAGTTTATCCAGCATCCAAAAAACTTTGGACTAATTGCATCCTATTTGGAAAGGAAGAGTGTTCCTGATTGTGTTTTATATTACTATTTAACCAAGAAAAATGAGAATTATAAGGCCCTCGTGAGAAGGAATTATGGAAAACGCAGAGGCAGAAATCAGCAGATTGCCCGTCCCTCACAAGAAGAAAAAGTAGAAGAAAAGGAAGAGGATAAAGCAGAAAAAACAGAGAAAAAGGAAGAAGAAAAGAAGGATGATGAAGAAAAAGATGATAAGGAAGACTCTAAAGAAACAACCAAGGAAAAGGACAGAACGGAAGCCACAGCAGAAGAACCTGAAGAAAGAGAGCAGGTCACTCCAAGGGGGCGAAAGACTGCTAACAGCCAAGGCCGCCGGAAGGGCCGGGTCACCAGGTCGATGACAAGTGAAGCTGCAGCTGCCAATGCTGCTGCTGCAGCCACTGAGGAGCCCCCGCCACCCCTGCCGCCACCACCAGAGCCCATTTCTACAGAACCTGTTGAGACTTCAAGATGGACAGAAGAAGAAATGGAAGTTGCTAAAAAAGGCCTGGTAGAACATGGTCGTAACTGGGCAGCCATTGCTAAAATGGTGGGAACTAAAAGTGAAGCCCAGTGCAAAAACTTCTATTTTAACTATAAAAGACGGCATAATCTTGACAACCTTTTGCAGCAACATAAACAGAAAGCTTCACGGAAACCCCGTGAGGAACGAGATGTATCTCAGTGTGAAAGTGTTGCTTCCACTGTTTCTGCCCAAGAGGATGAAGATATTGAAGCCTCAAATGAGGAGGAAAATCCAGAAGATAGTGAAGGTGCTGAAAATAGTTCTGATACAGAAAGTGCTCCCTCTCCTTCACCAGTTGAAGCTGCCAAGTCCAGTGAAGACAGCAGTGAAAATGCTGCTTCTCGAGGAAACACCGAGCCTGTGGCTGAGCTTGAGGCCACCACTGACCCTGCACCCTGTGCATCTCCCTCTTCAGCAGTTCCAACCACAAAACCAGCAGAAAGGGAAAGCGTGGAGGCCCAGGTGACCGACAGCGCCAGTGCTGAGACCGCAGAGCCGATGGACGTAGACCATGAGGAGTGCGGTGCCGAGGGCAGTTCTGTTCTTGATCCACCAGCCCCTACCAAAGCCGACTCCGTGGACCCAGAAATGCAGGTACCAGAAAATACTGCGTCTAAAGGTGAAGGGGATGCCAAGGAAAGAGACTTGGAGAGCACCAGTGAGAAGACAGAGGCTAGAGATGAAGACGTGGTAGTGGCTGAACAGATCGAGAGGCCTGAGCCACAGTCAGACGACGACTCCAGTGCCACTTGCAGTGCGGATGAGGGTGTGGATGGAGAGCCAGAGAGGCAGAGAGTGTTTCCCATGGATGCAAAGCCTTCATTGTTAACTCCTCCTGGATCTATCCTAATCTCATCCCCTATTAAACCAAACCCATTGGATCTGCCACAGCTTCAGCATCGAGCTGCTGTTATTCCACCAATGGTTTCTTGCACTCCATGTAATATACCAATTGGAACGCCCGTAAGTGGCTATGCTCTTTACCAACGGCACATTAAGGCCATGCATGAGTCAGCACTCCTGGAGGAGCAGCGGCAGAGGCAAGAACAGGTAGACTTGGAATGCAGAAGCTCTACAAGCCCATGCAGCACTTCTAAGAGTCCAAACAGGGAGTGGGAAGTCCTCCAACCTGCTCCGCATCAAGTGATAACTAACCTTCCTGAAGGGGTTCGGCTTCCAACAACACGACCAACCAGGCCACCACCTCCCCTCATCCCATCATCTAAAACCACAGTGGCATCAGAAAAACCATCCTTTATAATGGGAGGGTCTATCTCACAGGGAACTCCTGGCACTTACTTGTCTTCTCATAATCAGGCTTATCCACAAGAAGCCCCTAAGCCCTCCGTGGGGTCTATCTCTCTGGGATTGCCCCGGCAGCAGGAGTCTACCAAAGCAGCTCCTTTGACCTACATCAAGCAGGAAGAATTTTCTCCGAGAAGCCAAAACTCACAACCTGAGGGTTTATTGGTCAGAGCGCAGCATGAAGGTGTGGTCAGAGGCACTGCAGGGGCTGTCCAAGAAGGAAGTATAACTCGGGGAACTCCAGCCAGCAAAATCTCAGTGGAGACCATTTCATCGTTGCGGGGCTCTATTACCCAGGGGACCCCAGCTCTGCCCCAGGCTGGAATACCAACAGAGGCTTTGGTGAAGGGACCTGTCTCCAGGATGCCTATTGAAGAAAGCAGTCCTGAGAAGGTCAGAGAGGAAGCTGCATCCAAGGGCCATGTTATCTATGAAGGCAAAAGTGGACATATCTTATCATATGATAATATTAAGAATGCCCGAGAAGGGACTCGGAGTCCAAGAACAGCTCATGAAATGAGTTTAAAAAGAAGCTATGAGGCAGTGGAAGGAAGTATAAAGCAAGGCATGTCGATGAGGGAGTCTCCTGTGTCAGCACCTTTAGAGGGTTGCTTCCTAGAAACATGGTTGTTTGTTGGACTTGATCTCACAGCCCAGTGA
Peptide sequence:
MSSSGYPPNQGAFSTEQSRYPSHSVQYTFPSTRHQQEFAVPDYRSSHIEVSQASQLLQQQQQQQQLRRRPSLLSEFHPGSDRPQERRTGYEQFHSGPSPVDHDSLESKRPRLEPVSDAHFQRVSAAVLPLVHSLPEGLRSSADAKKDSAFGSKHEAPSSPLAGQPCGDDQNASPSKLSKEELIQSMDRVDREIAKVEQQILKLKKKQQQLEEEAAKPPEPEKPVSPPPVEQKHRSIVQIIYDENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHENIKTNQVMRKKLILFFKRRNHARKQREQKICQRYDQLMEAWEKKVDRIENNPRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMFDAEQRRVKFINMNGLMEDPMKVYKDRQFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKRRGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDDEEKDDKEDSKETTKEKDRTEATAEEPEEREQVTPRGRKTANSQGRRKGRVTRSMTSEAAAANAAAAATEEPPPPLPPPPEPISTEPVETSRWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQQHKQKASRKPREERDVSQCESVASTVSAQEDEDIEASNEEENPEDSEGAENSSDTESAPSPSPVEAAKSSEDSSENAASRGNTEPVAELEATTDPAPCASPSSAVPTTKPAERESVEAQVTDSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPENTASKGEGDAKERDLESTSEKTEARDEDVVVAEQIERPEPQSDDDSSATCSADEGVDGEPERQRVFPMDAKPSLLTPPGSILISSPIKPNPLDLPQLQHRAAVIPPMVSCTPCNIPIGTPVSGYALYQRHIKAMHESALLEEQRQRQEQVDLECRSSTSPCSTSKSPNREWEVLQPAPHQVITNLPEGVRLPTTRPTRPPPPLIPSSKTTVASEKPSFIMGGSISQGTPGTYLSSHNQAYPQEAPKPSVGSISLGLPRQQESTKAAPLTYIKQEEFSPRSQNSQPEGLLVRAQHEGVVRGTAGAVQEGSITRGTPASKISVETISSLRGSITQGTPALPQAGIPTEALVKGPVSRMPIEESSPEKVREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEMSLKRSYEAVEGSIKQGMSMRESPVSAPLEGCFLETWLFVGLDLTAQ
IRESfinder result
IRESfinder score
0.545695156
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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