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mmu_circNcor1_1710
Basic information of circular RNA
PanCircBase ID:
mmu_circNcor1_1710
mm39_Chr. Position ID:
chr11|62231233|62249841|-
Gene name:
Ncor1
Transcript:
ENSMUST00000101066.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
10
Exon/intron indexes:
31,30,29,28,27,26,25,24,23,22
Exon/intron offsets:
0,2589,4224,4827,8945,10970,12826,13963,14163,18447
Genomic length:
18608
Exon/intron sizes in nt:
22,23,55,25,78,41,41,10,00,00,00,00,00,000
Flanking exon/introns:
chr11:62229891-62231233|chr11:62249841-62257789
Splice length:
1710
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCCTCCAACCTGCTCCGCATCAAGTGATAACTAACCTTCCTGAAGGGGTTCGGCTTCCAACAACACGACCAACCAGGCCACCACCTCCCCTCATCCCATCATCTAAAACCACAGTGGCATCAGAAAAACCATCCTTTATAATGGGAGGGTCTATCTCACAGGGAACTCCTGGCACTTACTTGTCTTCTCATAATCAGGCTTATCCACAAGAAGCCCCTAAGCCCTCCGTGGGGTCTATCTCTCTGGGATTGCCCCGGCAGCAGGAGTCTACCAAAGCAGCTCCTTTGACCTACATCAAGCAGGAAGAATTTTCTCCGAGAAGCCAAAACTCACAACCTGAGGGTTTATTGGTCAGAGCGCAGCATGAAGGTGTGGTCAGAGGCACTGCAGGGGCTGTCCAAGAAGGAAGTATAACTCGGGGAACTCCAGCCAGCAAAATCTCAGTGGAGACCATTTCATCGTTGCGGGGCTCTATTACCCAGGGGACCCCAGCTCTGCCCCAGGCTGGAATACCAACAGAGGCTTTGGTGAAGGGACCTGTCTCCAGGATGCCTATTGAAGAAAGCAGTCCTGAGAAGGTCAGAGAGGAAGCTGCATCCAAGGGCCATGTTATCTATGAAGGCAAAAGTGGACATATCTTATCATATGATAATATTAAGAATGCCCGAGAAGGGACTCGGAGTCCAAGAACAGCTCATGAAATGAGTTTAAAAAGAAGCTATGAGGCAGTGGAAGGAAGTATAAAGCAAGGCATGTCGATGAGGGAGTCTCCTGTGTCAGCACCTTTAGAGGGTCTGATATGCCGAGCATTACCCAGGGGGAGCCCTCATTCTGACCTCAAAGAGAGGACTGTGCTGTCTGGTTCCATAATGCAGGGCACACCAAGAGCCACAGCGGAAAGCTTTGAGGACGGCCTTAAATACCCCAAACAGATAAAAAGGGAGAGCCCTCCCATCCGAGCATTTGAAGGTGCCATTACCAAAGGAAAACCATACGATGGTATCACCACCATCAAAGAAATGGGGCGCTCCATCCATGAAATCCCACGGCAAGATATTCTAACTCAGGAAAGCCGGAAAACTCCAGAAGTGGTCCAGAGCACGAGGCCAATAATTGAGGGTTCCATTTCCCAGGGCACACCAATAAAATTTGACAACAACTCAGGTCAATCAGCTATCAAACACAATGTGAAGTCCTTAATCACAGGGCCTAGCAAACTACCCCGTGGAATGCTGGAAATTGTACCAGAGAACATAAAAGTAGTAGAACGGGGAAAATATGAGGATGTGAAAGCAGGCGAGCCAGTGCGAGCCCGGCACACGTCAGTGGTGAGCTCTGGCCCCTCCGTTCTCAGGTCTACACTTCACGAAGCTCCCAAAGCACAGCTGAGCCCGGGACTCTATGATGACAGCAGCGCTCGCAGGACTCCTGTGAGCTACCAGAACACCATATCCAGAGGCTCCCCCATGATGAACAGAACTTCTGATGTTTCTTCCAGCAAGTCTGCCAGTCATGAAAGGAAATCAACTCTGACCCCAACCCAAAGAGAAAGTATACCAGCCAAGTCTCCAGTGCCCGGGGTGGATCCCGTCGTGAGTCACAGCCCATTTGATCCTCATCACAGGAGTAGCGCTGCAGGAGAGGTTTATCGGAGCCACCTACCCACGCACTTGGATCCAGCTATGCCCTTTCACAGGGCTTTGGATCCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTATCGGAGCCACCTACCCA
60.03
TGGTTGGTCGTGTTGTTGGA
60.04
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCATCACAGGAGTAGCGC
60.25
GTGTTGTTGGAAGCCGAACC
59.97
163
PCR template sequence:
GATCCTCATCACAGGAGTAGCGCTGCAGGAGAGGTTTATCGGAGCCACCTACCCACGCACTTGGATCCAGCTATGCCCTTTCACAGGGCTTTGGATCCTGTCCTCCAACCTGCTCCGCATCAAGTGATAACTAACCTTCCTGAAGGGGTTCGGCTTCCAACAACACGACCAACCAGGCCACCACCTCCCCTCATCCCATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(2), mmu-miR-27a-5p(2), mmu-miR-211-5p(1), mmu-miR-328-3p(1), mmu-miR-24-3p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-467b-5p(1), mmu-miR-370-3p(1), mmu-miR-324-3p(1), mmu-miR-190b-5p(1), mmu-miR-207(1), mmu-miR-540-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCTTTGGATCCTGTCCTCCAACCTGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNCOR1_1710_ORF_1
0.8858
0.140498948
0.999999999
3279
ORF sequence:
ATGGGAGGGTCTATCTCACAGGGAACTCCTGGCACTTACTTGTCTTCTCATAATCAGGCTTATCCACAAGAAGCCCCTAAGCCCTCCGTGGGGTCTATCTCTCTGGGATTGCCCCGGCAGCAGGAGTCTACCAAAGCAGCTCCTTTGACCTACATCAAGCAGGAAGAATTTTCTCCGAGAAGCCAAAACTCACAACCTGAGGGTTTATTGGTCAGAGCGCAGCATGAAGGTGTGGTCAGAGGCACTGCAGGGGCTGTCCAAGAAGGAAGTATAACTCGGGGAACTCCAGCCAGCAAAATCTCAGTGGAGACCATTTCATCGTTGCGGGGCTCTATTACCCAGGGGACCCCAGCTCTGCCCCAGGCTGGAATACCAACAGAGGCTTTGGTGAAGGGACCTGTCTCCAGGATGCCTATTGAAGAAAGCAGTCCTGAGAAGGTCAGAGAGGAAGCTGCATCCAAGGGCCATGTTATCTATGAAGGCAAAAGTGGACATATCTTATCATATGATAATATTAAGAATGCCCGAGAAGGGACTCGGAGTCCAAGAACAGCTCATGAAATGAGTTTAAAAAGAAGCTATGAGGCAGTGGAAGGAAGTATAAAGCAAGGCATGTCGATGAGGGAGTCTCCTGTGTCAGCACCTTTAGAGGGTCTGATATGCCGAGCATTACCCAGGGGGAGCCCTCATTCTGACCTCAAAGAGAGGACTGTGCTGTCTGGTTCCATAATGCAGGGCACACCAAGAGCCACAGCGGAAAGCTTTGAGGACGGCCTTAAATACCCCAAACAGATAAAAAGGGAGAGCCCTCCCATCCGAGCATTTGAAGGTGCCATTACCAAAGGAAAACCATACGATGGTATCACCACCATCAAAGAAATGGGGCGCTCCATCCATGAAATCCCACGGCAAGATATTCTAACTCAGGAAAGCCGGAAAACTCCAGAAGTGGTCCAGAGCACGAGGCCAATAATTGAGGGTTCCATTTCCCAGGGCACACCAATAAAATTTGACAACAACTCAGGTCAATCAGCTATCAAACACAATGTGAAGTCCTTAATCACAGGGCCTAGCAAACTACCCCGTGGAATGCTGGAAATTGTACCAGAGAACATAAAAGTAGTAGAACGGGGAAAATATGAGGATGTGAAAGCAGGCGAGCCAGTGCGAGCCCGGCACACGTCAGTGGTGAGCTCTGGCCCCTCCGTTCTCAGGTCTACACTTCACGAAGCTCCCAAAGCACAGCTGAGCCCGGGACTCTATGATGACAGCAGCGCTCGCAGGACTCCTGTGAGCTACCAGAACACCATATCCAGAGGCTCCCCCATGATGAACAGAACTTCTGATGTTTCTTCCAGCAAGTCTGCCAGTCATGAAAGGAAATCAACTCTGACCCCAACCCAAAGAGAAAGTATACCAGCCAAGTCTCCAGTGCCCGGGGTGGATCCCGTCGTGAGTCACAGCCCATTTGATCCTCATCACAGGAGTAGCGCTGCAGGAGAGGTTTATCGGAGCCACCTACCCACGCACTTGGATCCAGCTATGCCCTTTCACAGGGCTTTGGATCCTGTCCTCCAACCTGCTCCGCATCAAGTGATAACTAACCTTCCTGAAGGGGTTCGGCTTCCAACAACACGACCAACCAGGCCACCACCTCCCCTCATCCCATCATCTAAAACCACAGTGGCATCAGAAAAACCATCCTTTATAATGGGAGGGTCTATCTCACAGGGAACTCCTGGCACTTACTTGTCTTCTCATAATCAGGCTTATCCACAAGAAGCCCCTAAGCCCTCCGTGGGGTCTATCTCTCTGGGATTGCCCCGGCAGCAGGAGTCTACCAAAGCAGCTCCTTTGACCTACATCAAGCAGGAAGAATTTTCTCCGAGAAGCCAAAACTCACAACCTGAGGGTTTATTGGTCAGAGCGCAGCATGAAGGTGTGGTCAGAGGCACTGCAGGGGCTGTCCAAGAAGGAAGTATAACTCGGGGAACTCCAGCCAGCAAAATCTCAGTGGAGACCATTTCATCGTTGCGGGGCTCTATTACCCAGGGGACCCCAGCTCTGCCCCAGGCTGGAATACCAACAGAGGCTTTGGTGAAGGGACCTGTCTCCAGGATGCCTATTGAAGAAAGCAGTCCTGAGAAGGTCAGAGAGGAAGCTGCATCCAAGGGCCATGTTATCTATGAAGGCAAAAGTGGACATATCTTATCATATGATAATATTAAGAATGCCCGAGAAGGGACTCGGAGTCCAAGAACAGCTCATGAAATGAGTTTAAAAAGAAGCTATGAGGCAGTGGAAGGAAGTATAAAGCAAGGCATGTCGATGAGGGAGTCTCCTGTGTCAGCACCTTTAGAGGGTCTGATATGCCGAGCATTACCCAGGGGGAGCCCTCATTCTGACCTCAAAGAGAGGACTGTGCTGTCTGGTTCCATAATGCAGGGCACACCAAGAGCCACAGCGGAAAGCTTTGAGGACGGCCTTAAATACCCCAAACAGATAAAAAGGGAGAGCCCTCCCATCCGAGCATTTGAAGGTGCCATTACCAAAGGAAAACCATACGATGGTATCACCACCATCAAAGAAATGGGGCGCTCCATCCATGAAATCCCACGGCAAGATATTCTAACTCAGGAAAGCCGGAAAACTCCAGAAGTGGTCCAGAGCACGAGGCCAATAATTGAGGGTTCCATTTCCCAGGGCACACCAATAAAATTTGACAACAACTCAGGTCAATCAGCTATCAAACACAATGTGAAGTCCTTAATCACAGGGCCTAGCAAACTACCCCGTGGAATGCTGGAAATTGTACCAGAGAACATAAAAGTAGTAGAACGGGGAAAATATGAGGATGTGAAAGCAGGCGAGCCAGTGCGAGCCCGGCACACGTCAGTGGTGAGCTCTGGCCCCTCCGTTCTCAGGTCTACACTTCACGAAGCTCCCAAAGCACAGCTGAGCCCGGGACTCTATGATGACAGCAGCGCTCGCAGGACTCCTGTGAGCTACCAGAACACCATATCCAGAGGCTCCCCCATGATGAACAGAACTTCTGATGTTTCTTCCAGCAAGTCTGCCAGTCATGAAAGGAAATCAACTCTGACCCCAACCCAAAGAGAAAGTATACCAGCCAAGTCTCCAGTGCCCGGGGTGGATCCCGTCGTGAGTCACAGCCCATTTGATCCTCATCACAGGAGTAGCGCTGCAGGAGAGGTTTATCGGAGCCACCTACCCACGCACTTGGATCCAGCTATGCCCTTTCACAGGGCTTTGGATCCT
Peptide sequence:
MGGSISQGTPGTYLSSHNQAYPQEAPKPSVGSISLGLPRQQESTKAAPLTYIKQEEFSPRSQNSQPEGLLVRAQHEGVVRGTAGAVQEGSITRGTPASKISVETISSLRGSITQGTPALPQAGIPTEALVKGPVSRMPIEESSPEKVREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEMSLKRSYEAVEGSIKQGMSMRESPVSAPLEGLICRALPRGSPHSDLKERTVLSGSIMQGTPRATAESFEDGLKYPKQIKRESPPIRAFEGAITKGKPYDGITTIKEMGRSIHEIPRQDILTQESRKTPEVVQSTRPIIEGSISQGTPIKFDNNSGQSAIKHNVKSLITGPSKLPRGMLEIVPENIKVVERGKYEDVKAGEPVRARHTSVVSSGPSVLRSTLHEAPKAQLSPGLYDDSSARRTPVSYQNTISRGSPMMNRTSDVSSSKSASHERKSTLTPTQRESIPAKSPVPGVDPVVSHSPFDPHHRSSAAGEVYRSHLPTHLDPAMPFHRALDPVLQPAPHQVITNLPEGVRLPTTRPTRPPPPLIPSSKTTVASEKPSFIMGGSISQGTPGTYLSSHNQAYPQEAPKPSVGSISLGLPRQQESTKAAPLTYIKQEEFSPRSQNSQPEGLLVRAQHEGVVRGTAGAVQEGSITRGTPASKISVETISSLRGSITQGTPALPQAGIPTEALVKGPVSRMPIEESSPEKVREEAASKGHVIYEGKSGHILSYDNIKNAREGTRSPRTAHEMSLKRSYEAVEGSIKQGMSMRESPVSAPLEGLICRALPRGSPHSDLKERTVLSGSIMQGTPRATAESFEDGLKYPKQIKRESPPIRAFEGAITKGKPYDGITTIKEMGRSIHEIPRQDILTQESRKTPEVVQSTRPIIEGSISQGTPIKFDNNSGQSAIKHNVKSLITGPSKLPRGMLEIVPENIKVVERGKYEDVKAGEPVRARHTSVVSSGPSVLRSTLHEAPKAQLSPGLYDDSSARRTPVSYQNTISRGSPMMNRTSDVSSSKSASHERKSTLTPTQRESIPAKSPVPGVDPVVSHSPFDPHHRSSAAGEVYRSHLPTHLDPAMPFHRALDP
IRESfinder result
IRESfinder score
0.51040833
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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