top of page
mmu_circNcoa2_117
Basic information of circular RNA
PanCircBase ID:
mmu_circNcoa2_117
mm39_Chr. Position ID:
chr1|13356192|13369946|-
Gene name:
Ncoa2
Transcript:
ENSMUST00000143603.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,2
Exon/intron offsets:
0,13694
Genomic length:
13754
Exon/intron sizes in nt:
57,60
Flanking exon/introns:
chr1:13294937-13356192|chr1:13369946-13444161
Splice length:
117
Other database IDs:
CIRCpedia: MMU_CIRCpedia_39975, circAtlas: mmu-Ncoa2_0032
Human Ortholog IDs:
Mature spliced Sequence:
CCCTGTCAGCCTCAAGGCATTACGTCACCAAGTGAGAAGCCATGCCTCTATCCTGAAGTGATTTTCCTCGCATCTGGCTTCACTGCATTGGCTCTTCTGCACTGTGTACAGGCACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCATTGGCTCTTCTGCACTG
59.83
TGGCTTCTCACTTGGTGACG
60.25
75
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGCATTGGCTCTTCTGCAC
59.83
TGGCTTCTCACTTGGTGACG
60.25
77
PCR template sequence:
GATTTTCCTCGCATCTGGCTTCACTGCATTGGCTCTTCTGCACTGTGTACAGGCACAGCCCTGTCAGCCTCAAGGCATTACGTCACCAAGTGAGAAGCCATGCCTCTATCCTGAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(1), mmu-miR-152-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTACAGGCACAGCCCTGTCAGCCTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.660286275
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page