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mmu_circNckap5_5110
Basic information of circular RNA
PanCircBase ID:
mmu_circNckap5_5110
mm39_Chr. Position ID:
chr1|125904662|126186215|-
Gene name:
Nckap5
Transcript:
ENSMUST00000161954.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
14,13,12,11,10,9,8,7,6,5,4
Exon/intron offsets:
0,4457,37645,46107,47350,56847,125618,133283,147117,245683,281465
Genomic length:
281553
Exon/intron sizes in nt:
137,315,79,178,3740,192,120,39,69,153,88
Flanking exon/introns:
chr1:125842758-125904662|chr1:126186215-126309788
Splice length:
5110
Other database IDs:
circBase: hsa_circ_0056510
Human Ortholog IDs:
Mature spliced Sequence:
AATGGAAGAAACTGTCCGAAGTCTGTTGCAGAGCCAAGGATCTCCAGAGCAGAAAAAGGAAGAACCTGCCAAGATCACAGCCTACCAGGAAGGACTACCTGATGAAGAGAGAAAAGAGCAAGCAGCACTGGGTGATCTCCATGTGGTGGCAGCTGATGAGGACTCAAGAAGCGAGCACAGTAGTGTGGAGGAGGGAAAGGAAGACAGCAGACTGCTCCTGAAGAGACTGAAGGCCCTGGAGGCGGAGAATTCAGCACTGGCACTGGAAAACGAGAATCAGAGAGAACAGTATGAGCGATGTCTTGATGAGGTAGCCAACCAAGTTGTTCGAGCTCTACTCACTCAAAAGGATCTGAGGGAGGAGTGTGTAAAGTTGAAAACAAGAGTGTTTGACTTGGAGCAACAGAACCGAGCACTCAGCCTCCTGTTCCAACAGCGAGTCAGACCAGCTTCTGATGTGCTTCTCCAGGAACACCTCCAGAATGCAAAATCAGGAACCCCTGCCTTGAAACACTCTGGCTCAGGGGTTGTCATCCCTGATCACCTCTGTCCTCGCAACAGCTGCAGCAGTGGCAGTGAGCTATCGCTGTCAAGCACCTGCAGCGAGTACTCCAGTGGCTCCTCCTACACGTGGCAAGACAGGAAGCTCATTGGGAAAAGGCAATCATCGCGGATCTGGGATAAAAGACTAAGTATTGATTCTTCGCTCCCAAGTGGCTTCGCCAGCCCTGCAGATGAACTACCTCCGACCCGTATCAAAGAAAGCCACATTCTAGAGGGACTGAGGAAGCTACAGAAGCGGAAAGTGTTCCTTGAATCACCATCATTGGTGATAAGCAAATGGGGTTATAAAGATTGCATGAACTCGAATGAAGGGATCTATTCGCCAGGAATTAAAACCAGCAGCCTCAAGGAGTGTCCGCCCTGCCAACCGTCTGGCATGGGGATCCCCTGCCAGAATCTCCATCAGACATTCATCTATGATGCAAATTCTCATGAGGATGCACATGAAGAACTCCCATCCTCAGCCTTGCCACTAACATCTCCGAGCCAGGGCTACAGAATACAGGGCAGTAAATTGACACACAGTGTTTCAGACAGTCTGTTTAACTGGGAGCCACATAGGAAGTACTTTGCAGAAGGTACAGCCTCAGTATATACCAGAGAAATGCCTGAAAGGCTAGCTCGTTGTGCTAGCCACTGCCCCTTGGAGAGGAAGCTATGTCCCAGTATACACCTGCCCTGGGTGCAAAGAGACAGGGACCCACACAGCCAAGTTCATGGCCATGTGCCTCTGAACCTGCAGCTCTCAGATACCGATGACAATGAGACCCTAAACGAGCTACACATAGAGAGCAGTGATGAGAGAAGCCCTTCAGACCTGTCCTTGACTGGGGACACCGACAAGTCCATGGAGAACCTAGAGGTGGGATTCAGAAAGTCTGAAGGTGGCTCTCGGGACATGGGAGAAGAAGCATGTCCCACCCACTTAGAGACTAGCCCGAAGGCATTCAGTTTCATCAAGCAACAAAGGGTTGTCAAGAGGACCTCTTCGGAAGAATGTGTCACGGTCATATTTGATGCAGAAAATGGAGAGCCAGTGGAATTCAGCTCTCACCAGGCTGGAGTCGTCACTGTCACCAGGGATGAAATTTCCATCAGCTCAGCCCTTGCTGGGCCCTCAGAGGAACTCACTGAACTTTCACCTCAGGAAATTACTCACTTCCAGGCAGGAGCTACTGCAAGAGACTGTCCTTTTCTGAAGAGACCTGAAGAGGAGACTGCGAAAAACATTCCAAAAGATGAAAATCATATTCTCACAGCTCCGAATGACTTCTTCAGCTCCCAGACTATAATAACTCAGAATTCCCCAAGACCAAAGCTCGCCAAACCCACACAGGGGGTAGCCTGGCAGAGTAATTCTAGACCTGTTGGAAACATGGGTGTCTACACAAAGCAAGGTCTGACAAAAATCCCTTCCAGAGGCAAGTCTTCACCTCAGAAATCCAAACTTGTGGAGTCTATGCCCACCATGCTGGTCCCCTCCAGTGCCCTAGTGACTCCTGAAAAGACACCAGCATCCCCTATGGGGAAACTCTCACAATGTAGAAAGGCAGAGAGCCCTGGTTCTCTCTGTGATGTACAGCCAGAATCACACATTCCAAAACACCCTGCCCAGGTTCCTCATATCCCCAAAATTTCCAATAAGAAGAACTGGGTTCAGTGCCCCAGGAGTCAGACTTCAGGGATCCAGTCACGGCATCTCATGGGGAGAAGTGACAGTAGTGAAATGAGGTCCAATGGCTGTGTCTCTGCGCCACAGACAAGAATGAGGTCTCCCTCCCCTCCAACCCCTCCAGGGAGATCAGTGTCACTCCTGGTTAGACCCAGTTATGATTACCCACCACTACCATCACCTGCCAAACCTGAAACTCAGGGCCCTGGAGACGCTGTAAGTCCAGGGTTGAAATCCCCGCTGTTGAAAGGATCCTCTGCTCCTCTTGTCTCTTCCAGTCCAGTGATGTCAGAAATACAGAAGAAACCATCTGTGGCCTCCAGAAAGTCTGCCTTCCCTCCAGCTCTTCCCTCAACCCAAGCGGTAGTGCACACCAGATACCCTGAACACATAGCCTCCAGTCCATTTGCTGTGACGACTTCAGGGCCCCCAAAAGTCTCTCCAAAAAGAGGCATCCCTAAACCTCCCCCTCACCATGCACTAGGAACTGCCCACATGGACACAGACTTACAGACACCCAAGACTTGTCCTTCAAGCTGTGAACTGCTAGAGGTGACATCTTGTAAAAGCCTGTCTCCAGGGAGAAAAAGACAGTTGAGTGACAGCACTGTGATGCCCCACAGGCCTTCCTTCTCAGGAGTGAATGAGTCCTTGACACCTCAGGTTAACAGTCCATCCTCCTCTTCCTCATCCTGTAGAAACCAAGGGTCCTCACAAGGTGGCCAGAACTCTCCCGAGAAAGGACCTAAAACTCGCCTCCCAGTAGGACTCAAAGTTCTCATGAAGTCTCCTCAGTTGCTCAAGAAAACTTCCTTGGTACCAGGGAAACAAGAAAAGGATAGTTTAAATGAAGCATCTCGAAGCTGTGTAGCAGCAAACACGTCTAATCCTGAGGACTCCAAAGACCCTGCAAGTCTGGAGACCTCAAGAGATGAGAGAACCACAGCCTTACTAGGTGTGAGAGGTCCCGACAGTCTAGCTAGAGGACTTGCCTTAGACTCAACAATGCCAGAATCGTTAGAATGTAGCATCTCCAGAGATGATGGAAGAGATGGGGCAGACAGCAGAGCCATAAAAAGATCCTTCTCCTCCAGCAAGCCACACCTAAAGCCTGCTCTAGGCATGAATGGAGCCAAAGCTCGGAGTCAGAGCTTCAGCATCCACTTGGGAGAGAAGCCTTCCACACCCCCAACAGAAGGGCCAGGCAAGATTCGAACTCAGATTATCACCAACACGGCTGAAAGAGGCAACTCCCTCACCAGACAGAATATCTCAATGGAAGGGTCCCCAAGCAAGACCCCCTCTGTCTCAACATCTGATAATCTGCCCAATGCTGGAAGGCCCCTGGGAAACCCCTTTTCCAGGCAGAGTTCTCTCTGTAGCACCGGAAGTTCTAGCAGCCAGCACGGAAGCCCAAGCAAGTTACCCTTGAGGATGCTCACAAGGCCGGAAGGACTCCTCACTCCTGGAGTGGAAGACCAACGGCTCTCTACTCAGGAAGAGTGTCCTGAAAGAGGTGTACATGAGCAATCTAGCAGTGACCACCATAGGCATCCATCTCCTCTTTCAGACTGCCCTCAGTTCCTGCACGTTCCAGGGAGGATGCAGCGCCCAAGCAATTTGGAAACAAGTGGGATATCTAAGCTAGAAACTTCTGGAAGGCATCCAGATGCTTCTTCAACTGGGACTAGTGTCGTGAGCCCAGAAGCCCCCCTCTCACCCTCCATCGAAGAAAAGGTCATGTTGTGCATTCAGGAGAATGTGGAAAAGGGCCAAGTGCAGACAAAGTCTGCCTCTGTGGAAGTGAAGCCCAGGGCAGGGCCTTCGTTCACCAGCTGGTTTGGTTTTCGAAAGAGCAGGCTTCCAGCTCTCAGTAGCAGGAGAATGGAAGCTTCCAAGAGTAAAGTGGAAAAGAAAGACACAAAACTGAAATCTGAGAGGAAAAAAGAAAAGAAGAAAGCTGAAGTACAATCAAAGATAGAAAACGAACTGAGTAGGGGGACCAAGAAGGCAGATGGTCAGAGTCCAGACGATGGTCTGCAAAGCTCAGAGAGTCTGAAAGTATCCCAAGACATTTATAACCAAATGAAGTTGGAGCCAAGGAATAGACCCAGCCCTGCTGTGTGCCCAACAAAAGATGCCTTCATGACAGAACTTCTAAACAGAGTTGATAAGAGAGCCTCGGTACAGAGAGAGAGTGGATCAAAGGGTGTTTCCTGCAGGAGCGTGTTAGAGGGCACCTCCCAGGGCTCCTGTTTCGCCAGCGGCTCTGTGAGCACTCAAGGAAGTCAAAAGAAAAACATCAAAACCAAAGTCGATATGGAAAAACCAAGAGAATCCTTGGGGGCCGAGGTCAATGAAGATGTACAAGAAGATGAAGAAGATAGAGTTGCTGACACTACTCTCCAGAGCCACATGATAGAATCCAACTGCCAGATGAGAACACTGGACAGCGGGATTGGAACCTTTCCCCTCCCAGACTCAGGAAACCGCTCAGTGGGACGATACATATGCCAGCAGGACTCTCCAGAGGACACTGATGCCCTCCTGCCTCTCCAGCCAGCCGCTTCCATGGCATCCTCTGCCAGAGCCCAAACCCTTGACCGCGAAGTGCCTTCCTCCACAGACAGCCAGAGCTCCCCGGAGTCCATGATCATCCATTCCATATCTGACCCCAGCATGATGGCCAGAGAGATGAGAGCCTCACAGAGTCACCTTCCCAAGCCTACCTCCTCAGGAAAACCTAGTTTTGAAAAGCAAAATGGAGCAGAGTCAAAGGCTCACACTGGCCCATCATTCGAATATGCTGAGGATGCAGTGGCAAGTGAGCCCCTTTCAGGATGGAGGGGTGAAGATGCTACTACTGAGACCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TATGCTGAGGATGCAGTGGC
60.18
TCCTTCCTGGTAGGCTGTGA
59.88
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TATGCTGAGGATGCAGTGGC
60.18
AGTCCTTCCTGGTAGGCTGT
59.88
168
PCR template sequence:
AAAGGCTCACACTGGCCCATCATTCGAATATGCTGAGGATGCAGTGGCAAGTGAGCCCCTTTCAGGATGGAGGGGTGAAGATGCTACTACTGAGACCCAGAATGGAAGAAACTGTCCGAAGTCTGTTGCAGAGCCAAGGATCTCCAGAGCAGAAAAAGGAAGAACCTGCCAAGATCACAGCCTACCAGGAAGGACTACCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
45
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(3), mmu-miR-146a-5p(2), mmu-miR-328-3p(2), mmu-miR-196a-5p(2), mmu-miR-149-5p(2), mmu-miR-452-3p(2), mmu-miR-146b-5p(2), mmu-miR-124-3p(1), mmu-miR-134-5p(1), mmu-let-7a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-199a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-221-3p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-205-5p(1), mmu-let-7c-5p(1), mmu-miR-298-5p(1), mmu-miR-217-5p(1), mmu-miR-222-3p(1), mmu-miR-709(1), mmu-miR-138-5p(1), mmu-miR-339-5p(1), mmu-let-7d-5p(1), mmu-miR-351-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-22-3p(1), mmu-miR-127-5p(1), mmu-miR-125b-1-3p(1), mmu-miR-511-3p(1), mmu-miR-541-5p(1), mmu-miR-324-3p(1), mmu-miR-98-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-540-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
TACTGAGACCCAGAATGGAAGAAACT
siRNA sets
TTTCTTCCATTCTGGGTCT, AGTTTCTTCCATTCTGGGT, TTCTTCCATTCTGGGTCTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNCKAP5_5110_ORF_1
0.7253
0.147393108
1
5223
ORF sequence:
ATGGAGCAGAGTCAAAGGCTCACACTGGCCCATCATTCGAATATGCTGAGGATGCAGTGGCAAGTGAGCCCCTTTCAGGATGGAGGGGTGAAGATGCTACTACTGAGACCCAGAATGGAAGAAACTGTCCGAAGTCTGTTGCAGAGCCAAGGATCTCCAGAGCAGAAAAAGGAAGAACCTGCCAAGATCACAGCCTACCAGGAAGGACTACCTGATGAAGAGAGAAAAGAGCAAGCAGCACTGGGTGATCTCCATGTGGTGGCAGCTGATGAGGACTCAAGAAGCGAGCACAGTAGTGTGGAGGAGGGAAAGGAAGACAGCAGACTGCTCCTGAAGAGACTGAAGGCCCTGGAGGCGGAGAATTCAGCACTGGCACTGGAAAACGAGAATCAGAGAGAACAGTATGAGCGATGTCTTGATGAGGTAGCCAACCAAGTTGTTCGAGCTCTACTCACTCAAAAGGATCTGAGGGAGGAGTGTGTAAAGTTGAAAACAAGAGTGTTTGACTTGGAGCAACAGAACCGAGCACTCAGCCTCCTGTTCCAACAGCGAGTCAGACCAGCTTCTGATGTGCTTCTCCAGGAACACCTCCAGAATGCAAAATCAGGAACCCCTGCCTTGAAACACTCTGGCTCAGGGGTTGTCATCCCTGATCACCTCTGTCCTCGCAACAGCTGCAGCAGTGGCAGTGAGCTATCGCTGTCAAGCACCTGCAGCGAGTACTCCAGTGGCTCCTCCTACACGTGGCAAGACAGGAAGCTCATTGGGAAAAGGCAATCATCGCGGATCTGGGATAAAAGACTAAGTATTGATTCTTCGCTCCCAAGTGGCTTCGCCAGCCCTGCAGATGAACTACCTCCGACCCGTATCAAAGAAAGCCACATTCTAGAGGGACTGAGGAAGCTACAGAAGCGGAAAGTGTTCCTTGAATCACCATCATTGGTGATAAGCAAATGGGGTTATAAAGATTGCATGAACTCGAATGAAGGGATCTATTCGCCAGGAATTAAAACCAGCAGCCTCAAGGAGTGTCCGCCCTGCCAACCGTCTGGCATGGGGATCCCCTGCCAGAATCTCCATCAGACATTCATCTATGATGCAAATTCTCATGAGGATGCACATGAAGAACTCCCATCCTCAGCCTTGCCACTAACATCTCCGAGCCAGGGCTACAGAATACAGGGCAGTAAATTGACACACAGTGTTTCAGACAGTCTGTTTAACTGGGAGCCACATAGGAAGTACTTTGCAGAAGGTACAGCCTCAGTATATACCAGAGAAATGCCTGAAAGGCTAGCTCGTTGTGCTAGCCACTGCCCCTTGGAGAGGAAGCTATGTCCCAGTATACACCTGCCCTGGGTGCAAAGAGACAGGGACCCACACAGCCAAGTTCATGGCCATGTGCCTCTGAACCTGCAGCTCTCAGATACCGATGACAATGAGACCCTAAACGAGCTACACATAGAGAGCAGTGATGAGAGAAGCCCTTCAGACCTGTCCTTGACTGGGGACACCGACAAGTCCATGGAGAACCTAGAGGTGGGATTCAGAAAGTCTGAAGGTGGCTCTCGGGACATGGGAGAAGAAGCATGTCCCACCCACTTAGAGACTAGCCCGAAGGCATTCAGTTTCATCAAGCAACAAAGGGTTGTCAAGAGGACCTCTTCGGAAGAATGTGTCACGGTCATATTTGATGCAGAAAATGGAGAGCCAGTGGAATTCAGCTCTCACCAGGCTGGAGTCGTCACTGTCACCAGGGATGAAATTTCCATCAGCTCAGCCCTTGCTGGGCCCTCAGAGGAACTCACTGAACTTTCACCTCAGGAAATTACTCACTTCCAGGCAGGAGCTACTGCAAGAGACTGTCCTTTTCTGAAGAGACCTGAAGAGGAGACTGCGAAAAACATTCCAAAAGATGAAAATCATATTCTCACAGCTCCGAATGACTTCTTCAGCTCCCAGACTATAATAACTCAGAATTCCCCAAGACCAAAGCTCGCCAAACCCACACAGGGGGTAGCCTGGCAGAGTAATTCTAGACCTGTTGGAAACATGGGTGTCTACACAAAGCAAGGTCTGACAAAAATCCCTTCCAGAGGCAAGTCTTCACCTCAGAAATCCAAACTTGTGGAGTCTATGCCCACCATGCTGGTCCCCTCCAGTGCCCTAGTGACTCCTGAAAAGACACCAGCATCCCCTATGGGGAAACTCTCACAATGTAGAAAGGCAGAGAGCCCTGGTTCTCTCTGTGATGTACAGCCAGAATCACACATTCCAAAACACCCTGCCCAGGTTCCTCATATCCCCAAAATTTCCAATAAGAAGAACTGGGTTCAGTGCCCCAGGAGTCAGACTTCAGGGATCCAGTCACGGCATCTCATGGGGAGAAGTGACAGTAGTGAAATGAGGTCCAATGGCTGTGTCTCTGCGCCACAGACAAGAATGAGGTCTCCCTCCCCTCCAACCCCTCCAGGGAGATCAGTGTCACTCCTGGTTAGACCCAGTTATGATTACCCACCACTACCATCACCTGCCAAACCTGAAACTCAGGGCCCTGGAGACGCTGTAAGTCCAGGGTTGAAATCCCCGCTGTTGAAAGGATCCTCTGCTCCTCTTGTCTCTTCCAGTCCAGTGATGTCAGAAATACAGAAGAAACCATCTGTGGCCTCCAGAAAGTCTGCCTTCCCTCCAGCTCTTCCCTCAACCCAAGCGGTAGTGCACACCAGATACCCTGAACACATAGCCTCCAGTCCATTTGCTGTGACGACTTCAGGGCCCCCAAAAGTCTCTCCAAAAAGAGGCATCCCTAAACCTCCCCCTCACCATGCACTAGGAACTGCCCACATGGACACAGACTTACAGACACCCAAGACTTGTCCTTCAAGCTGTGAACTGCTAGAGGTGACATCTTGTAAAAGCCTGTCTCCAGGGAGAAAAAGACAGTTGAGTGACAGCACTGTGATGCCCCACAGGCCTTCCTTCTCAGGAGTGAATGAGTCCTTGACACCTCAGGTTAACAGTCCATCCTCCTCTTCCTCATCCTGTAGAAACCAAGGGTCCTCACAAGGTGGCCAGAACTCTCCCGAGAAAGGACCTAAAACTCGCCTCCCAGTAGGACTCAAAGTTCTCATGAAGTCTCCTCAGTTGCTCAAGAAAACTTCCTTGGTACCAGGGAAACAAGAAAAGGATAGTTTAAATGAAGCATCTCGAAGCTGTGTAGCAGCAAACACGTCTAATCCTGAGGACTCCAAAGACCCTGCAAGTCTGGAGACCTCAAGAGATGAGAGAACCACAGCCTTACTAGGTGTGAGAGGTCCCGACAGTCTAGCTAGAGGACTTGCCTTAGACTCAACAATGCCAGAATCGTTAGAATGTAGCATCTCCAGAGATGATGGAAGAGATGGGGCAGACAGCAGAGCCATAAAAAGATCCTTCTCCTCCAGCAAGCCACACCTAAAGCCTGCTCTAGGCATGAATGGAGCCAAAGCTCGGAGTCAGAGCTTCAGCATCCACTTGGGAGAGAAGCCTTCCACACCCCCAACAGAAGGGCCAGGCAAGATTCGAACTCAGATTATCACCAACACGGCTGAAAGAGGCAACTCCCTCACCAGACAGAATATCTCAATGGAAGGGTCCCCAAGCAAGACCCCCTCTGTCTCAACATCTGATAATCTGCCCAATGCTGGAAGGCCCCTGGGAAACCCCTTTTCCAGGCAGAGTTCTCTCTGTAGCACCGGAAGTTCTAGCAGCCAGCACGGAAGCCCAAGCAAGTTACCCTTGAGGATGCTCACAAGGCCGGAAGGACTCCTCACTCCTGGAGTGGAAGACCAACGGCTCTCTACTCAGGAAGAGTGTCCTGAAAGAGGTGTACATGAGCAATCTAGCAGTGACCACCATAGGCATCCATCTCCTCTTTCAGACTGCCCTCAGTTCCTGCACGTTCCAGGGAGGATGCAGCGCCCAAGCAATTTGGAAACAAGTGGGATATCTAAGCTAGAAACTTCTGGAAGGCATCCAGATGCTTCTTCAACTGGGACTAGTGTCGTGAGCCCAGAAGCCCCCCTCTCACCCTCCATCGAAGAAAAGGTCATGTTGTGCATTCAGGAGAATGTGGAAAAGGGCCAAGTGCAGACAAAGTCTGCCTCTGTGGAAGTGAAGCCCAGGGCAGGGCCTTCGTTCACCAGCTGGTTTGGTTTTCGAAAGAGCAGGCTTCCAGCTCTCAGTAGCAGGAGAATGGAAGCTTCCAAGAGTAAAGTGGAAAAGAAAGACACAAAACTGAAATCTGAGAGGAAAAAAGAAAAGAAGAAAGCTGAAGTACAATCAAAGATAGAAAACGAACTGAGTAGGGGGACCAAGAAGGCAGATGGTCAGAGTCCAGACGATGGTCTGCAAAGCTCAGAGAGTCTGAAAGTATCCCAAGACATTTATAACCAAATGAAGTTGGAGCCAAGGAATAGACCCAGCCCTGCTGTGTGCCCAACAAAAGATGCCTTCATGACAGAACTTCTAAACAGAGTTGATAAGAGAGCCTCGGTACAGAGAGAGAGTGGATCAAAGGGTGTTTCCTGCAGGAGCGTGTTAGAGGGCACCTCCCAGGGCTCCTGTTTCGCCAGCGGCTCTGTGAGCACTCAAGGAAGTCAAAAGAAAAACATCAAAACCAAAGTCGATATGGAAAAACCAAGAGAATCCTTGGGGGCCGAGGTCAATGAAGATGTACAAGAAGATGAAGAAGATAGAGTTGCTGACACTACTCTCCAGAGCCACATGATAGAATCCAACTGCCAGATGAGAACACTGGACAGCGGGATTGGAACCTTTCCCCTCCCAGACTCAGGAAACCGCTCAGTGGGACGATACATATGCCAGCAGGACTCTCCAGAGGACACTGATGCCCTCCTGCCTCTCCAGCCAGCCGCTTCCATGGCATCCTCTGCCAGAGCCCAAACCCTTGACCGCGAAGTGCCTTCCTCCACAGACAGCCAGAGCTCCCCGGAGTCCATGATCATCCATTCCATATCTGACCCCAGCATGATGGCCAGAGAGATGAGAGCCTCACAGAGTCACCTTCCCAAGCCTACCTCCTCAGGAAAACCTAGTTTTGAAAAGCAAAATGGAGCAGAGTCAAAGGCTCACACTGGCCCATCATTCGAATATGCTGAGGATGCAGTGGCAAGTGAGCCCCTTTCAGGATGGAGGGGTGAAGATGCTACTACTGAGACCCAG
Peptide sequence:
MEQSQRLTLAHHSNMLRMQWQVSPFQDGGVKMLLLRPRMEETVRSLLQSQGSPEQKKEEPAKITAYQEGLPDEERKEQAALGDLHVVAADEDSRSEHSSVEEGKEDSRLLLKRLKALEAENSALALENENQREQYERCLDEVANQVVRALLTQKDLREECVKLKTRVFDLEQQNRALSLLFQQRVRPASDVLLQEHLQNAKSGTPALKHSGSGVVIPDHLCPRNSCSSGSELSLSSTCSEYSSGSSYTWQDRKLIGKRQSSRIWDKRLSIDSSLPSGFASPADELPPTRIKESHILEGLRKLQKRKVFLESPSLVISKWGYKDCMNSNEGIYSPGIKTSSLKECPPCQPSGMGIPCQNLHQTFIYDANSHEDAHEELPSSALPLTSPSQGYRIQGSKLTHSVSDSLFNWEPHRKYFAEGTASVYTREMPERLARCASHCPLERKLCPSIHLPWVQRDRDPHSQVHGHVPLNLQLSDTDDNETLNELHIESSDERSPSDLSLTGDTDKSMENLEVGFRKSEGGSRDMGEEACPTHLETSPKAFSFIKQQRVVKRTSSEECVTVIFDAENGEPVEFSSHQAGVVTVTRDEISISSALAGPSEELTELSPQEITHFQAGATARDCPFLKRPEEETAKNIPKDENHILTAPNDFFSSQTIITQNSPRPKLAKPTQGVAWQSNSRPVGNMGVYTKQGLTKIPSRGKSSPQKSKLVESMPTMLVPSSALVTPEKTPASPMGKLSQCRKAESPGSLCDVQPESHIPKHPAQVPHIPKISNKKNWVQCPRSQTSGIQSRHLMGRSDSSEMRSNGCVSAPQTRMRSPSPPTPPGRSVSLLVRPSYDYPPLPSPAKPETQGPGDAVSPGLKSPLLKGSSAPLVSSSPVMSEIQKKPSVASRKSAFPPALPSTQAVVHTRYPEHIASSPFAVTTSGPPKVSPKRGIPKPPPHHALGTAHMDTDLQTPKTCPSSCELLEVTSCKSLSPGRKRQLSDSTVMPHRPSFSGVNESLTPQVNSPSSSSSSCRNQGSSQGGQNSPEKGPKTRLPVGLKVLMKSPQLLKKTSLVPGKQEKDSLNEASRSCVAANTSNPEDSKDPASLETSRDERTTALLGVRGPDSLARGLALDSTMPESLECSISRDDGRDGADSRAIKRSFSSSKPHLKPALGMNGAKARSQSFSIHLGEKPSTPPTEGPGKIRTQIITNTAERGNSLTRQNISMEGSPSKTPSVSTSDNLPNAGRPLGNPFSRQSSLCSTGSSSSQHGSPSKLPLRMLTRPEGLLTPGVEDQRLSTQEECPERGVHEQSSSDHHRHPSPLSDCPQFLHVPGRMQRPSNLETSGISKLETSGRHPDASSTGTSVVSPEAPLSPSIEEKVMLCIQENVEKGQVQTKSASVEVKPRAGPSFTSWFGFRKSRLPALSSRRMEASKSKVEKKDTKLKSERKKEKKKAEVQSKIENELSRGTKKADGQSPDDGLQSSESLKVSQDIYNQMKLEPRNRPSPAVCPTKDAFMTELLNRVDKRASVQRESGSKGVSCRSVLEGTSQGSCFASGSVSTQGSQKKNIKTKVDMEKPRESLGAEVNEDVQEDEEDRVADTTLQSHMIESNCQMRTLDSGIGTFPLPDSGNRSVGRYICQQDSPEDTDALLPLQPAASMASSARAQTLDREVPSSTDSQSSPESMIIHSISDPSMMAREMRASQSHLPKPTSSGKPSFEKQNGAESKAHTGPSFEYAEDAVASEPLSGWRGEDATTETQ
IRESfinder result
IRESfinder score
0.535633241
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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