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mmu_circNbeal1_2751
Basic information of circular RNA
PanCircBase ID:
mmu_circNbeal1_2751
mm39_Chr. Position ID:
chr1|60276255|60304169|+
Gene name:
Nbeal1
Transcript:
ENSMUST00000160834.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
16
Exon/intron indexes:
15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30
Exon/intron offsets:
0,1475,5442,7697,10519,11266,13938,14207,16255,17797,20333,21553,23136,24313,27182,27785
Genomic length:
27914
Exon/intron sizes in nt:
12,03,04,86,90,16,91,30,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:60275662-60276255|chr1:60304169-60306917
Splice length:
2751
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CATAACATAACCATCGTTCACATGCCTGGAAAAAGGCCCTTTGGCCAGAGTCTTGTCTATATCTATGACAATGGACAACAAAAGGTTTCTGCCCCTCTCAGATTTCCTGCCATGAATGAGCCATTTACTTCCTGTTGTATTGGTTCAGCTGGGCAAAGAACCACTACTCCTCCACCATCTCAAATCCCAGATCCACCATTTTCTACTCCCATTACCCCTCACCGGACATCATTTGGTGGAATATTGTCATCAGCCTCCTGGGGAGGAACAATTGAAAAATCGAAATTGTTTACCAAATTAATTTCAGCTGGAACCCAAGATAGTGAATGGGGTTGTCCCACGTCTCTGGAGGGCCAGCTAGGATCTGTGATTATATTCCATGAAGCTCTGCAGCCTCCTCAGGTCAAGGCTTTGTATTTAGCAGGTCCAAATTGCTTAAGCCCTTGGAAGTGTCAAGACTGTGATATGGCCGACTTGCCAAGTAACATCCTCCTTCACTACACAGGAAAGGCTTGCAAAAATTCAATTTGCCTTGACTTGTCTGCTAACTGTTTGCATGGAAGATTAACAGGAAACAAAGTAGTGAATTGGGACATTAAGGACATCATCAATTGCATAGGTGGGTTAAATGTACTGTTTCCTTTGCTGGAACAAATAAGCCACTTTAGTGAAGGACAGACTTCTGAAGCAATGAGTGAAAACACAGTTCCTGAATTAGTAACACCTAGTGAACAAGAATGTATGGGATTGGCCTCCACAAGAGCATCAGAGTCAAGGCTGGAGAAAAATCTAATTGCAACATTTATTTTGATTGTGAAACACTTTATTCAGAGACATCCTATCAACCAGGACAATCTGATTCAGTCCCATGGAGTTGCAACTCTTGGTGCTTTACTTCAAAAGGTGCCAGGTTCTCAAATGGATGTTAATGTATTGATGGCAATTCAATTACTAATTGAGCAGGTATCATTAGAAAAAAACACACTGTTGCTTCAACAAATGTATCAGTGTTTACTCTTTGACTTCCGTATTTGGAACCGTGGAGATTTTCCTTTTCAGATTGGCCATATACAGTATCTTTCGACAATCATTAAAGACAGCAGGAGAGTTTTCAGGAAGAAGTACGGCGTGCAGTTTCTCCTGGATACACTTAGGATTTATTATGGGCATGGTTCTACATGTAATGAGCTATCTCCAGATGATATTCGAACAATAAGGACTTCTTTGTATGGGCTAATTAAATATTTTCTTTGTAAAGGTGGAACCCATGAAGAAATACAGAGTATCATAGGTTATATAGCTGCCACTAATGAAGAAGAACAGCTCTTTGGAATTTTGGATATACTTTTCAGTCTTCTACGAACCAGCCCAACTAGAGGTCAGCTTTTCTTACTGCTGTTTGAACCAGGAAATGCTGACATACTGTATGCCTTGCTGTTAAATCAGAAGTACTCTGACAAACTGAGAGAAATCATTTTTAAGGTCATGGAACAGATGTTAAAATGCACAAATGTTTATGAACGTAGTAAACAACGTATCCGTCTTAGAGAAGTTGGCTATTCAGGAATTGGACTCCTCCTTAATGAAGCACCAGTTAACACATCTCTTATTAAAAACCTTGTTAACCAAATCATTAATACAGATCCTGTTATTAATTTCAAAGATCTATTATCTGTAGTATATATCTGTCACAGAACACATGTAAATGTCAGAGTGGTCCTCTGTAGAAAGATATTACAGATTTTGCAGTCCCAGCCAGATGCAGCATACCAGATATCACAACAAGTGGGTTGGCAAGACACCTTTGTTAGACTTTTCTTAAAAGCAAATTTTGAAAATGTAAATTCCCTTAACAAACACGGGAAGACAGTTTCAATGAAAGAAAATAAAAATATGTCAACTGAAGATGTTAAGAGGAACTTTGAAAAACTGGATGATGAAAAAATGATGTTAGCTGACGTATCTTCAGACCATTGGAGTTTAGAAGATAGTCAGTCCCTGAACTCAAACACACCATTATTTCAAGAAGATAGCTCTGAAGGAGAATTATCTTTCAAGTCAGAGAATCAAGAAGAATTTTGGCATAGTAATACTTCCCATCTGAGCTTAGATCTCAGTGGAATTGATGCATGTGAACTGAGCGACAGTGGAAGTCAAGTGCCAGACAGTTCACCTAGCACTCCATCTCCAGTAGAGTCTACTAAGTCATTTTCTTTGCAGTCTGACAAAGAAAGAAGCATCACGAATGAAATGGGCTTCAGTGATGACTTCTCTTTTCTTGAAAGCCAAGAGAGATGTGAAGAAGAACTTTTTCAGCTGCTTACAAATATTTTGAATTATGTTATGTGTAAAGGACTAGAAAAGTCTGATGAAGACACTTGGATTGAAAGAGGACAGGTGTTTTCAGCACTAACTAAGCCAGGAATATCAAGTGAGCTGCTTCGACCCTCAGATGAAGTAAAACTAACTTTGCTACAGAAGATGTTAGAGTGGGCAATCACAGAAAATAGAGATGCAAAAAGTAGTCCTGTAACTGCTGAAAATGCCTTCCGACTCATGTTGATCGTACAAGACTTTCTGCAATCAGAAGGACTGGTTAATTCAAACATGTGGACTGAGAAGCTTTTAGAAGATGCCACGCAGCTCCTAGACTGTCTGTCAGTATGGTATTCTGAGAATCCAGCATGGGTAAAACTCTCTCAGATTCAGACCCAGCTGCTTCTAGAGTTCATCGGAAGAGGCAGTTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCAGATTCAGACCCAGCTGC
59.75
TGAGAGGGGCAGAAACCTTT
58.85
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGATTCAGACCCAGCTGCT
59.75
TGAGAGGGGCAGAAACCTTT
58.85
151
PCR template sequence:
CTGTCTGTCAGTATGGTATTCTGAGAATCCAGCATGGGTAAAACTCTCTCAGATTCAGACCCAGCTGCTTCTAGAGTTCATCGGAAGAGGCAGTTTGCAGCATAACATAACCATCGTTCACATGCCTGGAAAAAGGCCCTTTGGCCAGAGTCTTGTCTATATCTATGACAATGGACAACAAAAGGTTTCTGCCCCTCTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-1198-5p(2), mmu-miR-335-3p(2), mmu-miR-140-5p(1), mmu-miR-223-3p(1), mmu-miR-31-5p(1), mmu-miR-29b-3p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-320-3p(1), mmu-miR-30b-5p(1), mmu-miR-431-5p(1), mmu-miR-182-5p(1), mmu-miR-27a-5p(1), mmu-miR-680(1), mmu-miR-410-3p(1), mmu-miR-344d-3p(1), mmu-miR-376a-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGGCAGTTTGCAGCATAACATAACCA
siRNA sets
TATGTTATGCTGCAAACTG, TTATGTTATGCTGCAAACT, GTTATGCTGCAAACTGCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNBEAL1_2751_ORF_1
0.7652
-0.042257198
1
5481
ORF sequence:
ATGCCTGGAAAAAGGCCCTTTGGCCAGAGTCTTGTCTATATCTATGACAATGGACAACAAAAGGTTTCTGCCCCTCTCAGATTTCCTGCCATGAATGAGCCATTTACTTCCTGTTGTATTGGTTCAGCTGGGCAAAGAACCACTACTCCTCCACCATCTCAAATCCCAGATCCACCATTTTCTACTCCCATTACCCCTCACCGGACATCATTTGGTGGAATATTGTCATCAGCCTCCTGGGGAGGAACAATTGAAAAATCGAAATTGTTTACCAAATTAATTTCAGCTGGAACCCAAGATAGTGAATGGGGTTGTCCCACGTCTCTGGAGGGCCAGCTAGGATCTGTGATTATATTCCATGAAGCTCTGCAGCCTCCTCAGGTCAAGGCTTTGTATTTAGCAGGTCCAAATTGCTTAAGCCCTTGGAAGTGTCAAGACTGTGATATGGCCGACTTGCCAAGTAACATCCTCCTTCACTACACAGGAAAGGCTTGCAAAAATTCAATTTGCCTTGACTTGTCTGCTAACTGTTTGCATGGAAGATTAACAGGAAACAAAGTAGTGAATTGGGACATTAAGGACATCATCAATTGCATAGGTGGGTTAAATGTACTGTTTCCTTTGCTGGAACAAATAAGCCACTTTAGTGAAGGACAGACTTCTGAAGCAATGAGTGAAAACACAGTTCCTGAATTAGTAACACCTAGTGAACAAGAATGTATGGGATTGGCCTCCACAAGAGCATCAGAGTCAAGGCTGGAGAAAAATCTAATTGCAACATTTATTTTGATTGTGAAACACTTTATTCAGAGACATCCTATCAACCAGGACAATCTGATTCAGTCCCATGGAGTTGCAACTCTTGGTGCTTTACTTCAAAAGGTGCCAGGTTCTCAAATGGATGTTAATGTATTGATGGCAATTCAATTACTAATTGAGCAGGTATCATTAGAAAAAAACACACTGTTGCTTCAACAAATGTATCAGTGTTTACTCTTTGACTTCCGTATTTGGAACCGTGGAGATTTTCCTTTTCAGATTGGCCATATACAGTATCTTTCGACAATCATTAAAGACAGCAGGAGAGTTTTCAGGAAGAAGTACGGCGTGCAGTTTCTCCTGGATACACTTAGGATTTATTATGGGCATGGTTCTACATGTAATGAGCTATCTCCAGATGATATTCGAACAATAAGGACTTCTTTGTATGGGCTAATTAAATATTTTCTTTGTAAAGGTGGAACCCATGAAGAAATACAGAGTATCATAGGTTATATAGCTGCCACTAATGAAGAAGAACAGCTCTTTGGAATTTTGGATATACTTTTCAGTCTTCTACGAACCAGCCCAACTAGAGGTCAGCTTTTCTTACTGCTGTTTGAACCAGGAAATGCTGACATACTGTATGCCTTGCTGTTAAATCAGAAGTACTCTGACAAACTGAGAGAAATCATTTTTAAGGTCATGGAACAGATGTTAAAATGCACAAATGTTTATGAACGTAGTAAACAACGTATCCGTCTTAGAGAAGTTGGCTATTCAGGAATTGGACTCCTCCTTAATGAAGCACCAGTTAACACATCTCTTATTAAAAACCTTGTTAACCAAATCATTAATACAGATCCTGTTATTAATTTCAAAGATCTATTATCTGTAGTATATATCTGTCACAGAACACATGTAAATGTCAGAGTGGTCCTCTGTAGAAAGATATTACAGATTTTGCAGTCCCAGCCAGATGCAGCATACCAGATATCACAACAAGTGGGTTGGCAAGACACCTTTGTTAGACTTTTCTTAAAAGCAAATTTTGAAAATGTAAATTCCCTTAACAAACACGGGAAGACAGTTTCAATGAAAGAAAATAAAAATATGTCAACTGAAGATGTTAAGAGGAACTTTGAAAAACTGGATGATGAAAAAATGATGTTAGCTGACGTATCTTCAGACCATTGGAGTTTAGAAGATAGTCAGTCCCTGAACTCAAACACACCATTATTTCAAGAAGATAGCTCTGAAGGAGAATTATCTTTCAAGTCAGAGAATCAAGAAGAATTTTGGCATAGTAATACTTCCCATCTGAGCTTAGATCTCAGTGGAATTGATGCATGTGAACTGAGCGACAGTGGAAGTCAAGTGCCAGACAGTTCACCTAGCACTCCATCTCCAGTAGAGTCTACTAAGTCATTTTCTTTGCAGTCTGACAAAGAAAGAAGCATCACGAATGAAATGGGCTTCAGTGATGACTTCTCTTTTCTTGAAAGCCAAGAGAGATGTGAAGAAGAACTTTTTCAGCTGCTTACAAATATTTTGAATTATGTTATGTGTAAAGGACTAGAAAAGTCTGATGAAGACACTTGGATTGAAAGAGGACAGGTGTTTTCAGCACTAACTAAGCCAGGAATATCAAGTGAGCTGCTTCGACCCTCAGATGAAGTAAAACTAACTTTGCTACAGAAGATGTTAGAGTGGGCAATCACAGAAAATAGAGATGCAAAAAGTAGTCCTGTAACTGCTGAAAATGCCTTCCGACTCATGTTGATCGTACAAGACTTTCTGCAATCAGAAGGACTGGTTAATTCAAACATGTGGACTGAGAAGCTTTTAGAAGATGCCACGCAGCTCCTAGACTGTCTGTCAGTATGGTATTCTGAGAATCCAGCATGGGTAAAACTCTCTCAGATTCAGACCCAGCTGCTTCTAGAGTTCATCGGAAGAGGCAGTTTGCAGCATAACATAACCATCGTTCACATGCCTGGAAAAAGGCCCTTTGGCCAGAGTCTTGTCTATATCTATGACAATGGACAACAAAAGGTTTCTGCCCCTCTCAGATTTCCTGCCATGAATGAGCCATTTACTTCCTGTTGTATTGGTTCAGCTGGGCAAAGAACCACTACTCCTCCACCATCTCAAATCCCAGATCCACCATTTTCTACTCCCATTACCCCTCACCGGACATCATTTGGTGGAATATTGTCATCAGCCTCCTGGGGAGGAACAATTGAAAAATCGAAATTGTTTACCAAATTAATTTCAGCTGGAACCCAAGATAGTGAATGGGGTTGTCCCACGTCTCTGGAGGGCCAGCTAGGATCTGTGATTATATTCCATGAAGCTCTGCAGCCTCCTCAGGTCAAGGCTTTGTATTTAGCAGGTCCAAATTGCTTAAGCCCTTGGAAGTGTCAAGACTGTGATATGGCCGACTTGCCAAGTAACATCCTCCTTCACTACACAGGAAAGGCTTGCAAAAATTCAATTTGCCTTGACTTGTCTGCTAACTGTTTGCATGGAAGATTAACAGGAAACAAAGTAGTGAATTGGGACATTAAGGACATCATCAATTGCATAGGTGGGTTAAATGTACTGTTTCCTTTGCTGGAACAAATAAGCCACTTTAGTGAAGGACAGACTTCTGAAGCAATGAGTGAAAACACAGTTCCTGAATTAGTAACACCTAGTGAACAAGAATGTATGGGATTGGCCTCCACAAGAGCATCAGAGTCAAGGCTGGAGAAAAATCTAATTGCAACATTTATTTTGATTGTGAAACACTTTATTCAGAGACATCCTATCAACCAGGACAATCTGATTCAGTCCCATGGAGTTGCAACTCTTGGTGCTTTACTTCAAAAGGTGCCAGGTTCTCAAATGGATGTTAATGTATTGATGGCAATTCAATTACTAATTGAGCAGGTATCATTAGAAAAAAACACACTGTTGCTTCAACAAATGTATCAGTGTTTACTCTTTGACTTCCGTATTTGGAACCGTGGAGATTTTCCTTTTCAGATTGGCCATATACAGTATCTTTCGACAATCATTAAAGACAGCAGGAGAGTTTTCAGGAAGAAGTACGGCGTGCAGTTTCTCCTGGATACACTTAGGATTTATTATGGGCATGGTTCTACATGTAATGAGCTATCTCCAGATGATATTCGAACAATAAGGACTTCTTTGTATGGGCTAATTAAATATTTTCTTTGTAAAGGTGGAACCCATGAAGAAATACAGAGTATCATAGGTTATATAGCTGCCACTAATGAAGAAGAACAGCTCTTTGGAATTTTGGATATACTTTTCAGTCTTCTACGAACCAGCCCAACTAGAGGTCAGCTTTTCTTACTGCTGTTTGAACCAGGAAATGCTGACATACTGTATGCCTTGCTGTTAAATCAGAAGTACTCTGACAAACTGAGAGAAATCATTTTTAAGGTCATGGAACAGATGTTAAAATGCACAAATGTTTATGAACGTAGTAAACAACGTATCCGTCTTAGAGAAGTTGGCTATTCAGGAATTGGACTCCTCCTTAATGAAGCACCAGTTAACACATCTCTTATTAAAAACCTTGTTAACCAAATCATTAATACAGATCCTGTTATTAATTTCAAAGATCTATTATCTGTAGTATATATCTGTCACAGAACACATGTAAATGTCAGAGTGGTCCTCTGTAGAAAGATATTACAGATTTTGCAGTCCCAGCCAGATGCAGCATACCAGATATCACAACAAGTGGGTTGGCAAGACACCTTTGTTAGACTTTTCTTAAAAGCAAATTTTGAAAATGTAAATTCCCTTAACAAACACGGGAAGACAGTTTCAATGAAAGAAAATAAAAATATGTCAACTGAAGATGTTAAGAGGAACTTTGAAAAACTGGATGATGAAAAAATGATGTTAGCTGACGTATCTTCAGACCATTGGAGTTTAGAAGATAGTCAGTCCCTGAACTCAAACACACCATTATTTCAAGAAGATAGCTCTGAAGGAGAATTATCTTTCAAGTCAGAGAATCAAGAAGAATTTTGGCATAGTAATACTTCCCATCTGAGCTTAGATCTCAGTGGAATTGATGCATGTGAACTGAGCGACAGTGGAAGTCAAGTGCCAGACAGTTCACCTAGCACTCCATCTCCAGTAGAGTCTACTAAGTCATTTTCTTTGCAGTCTGACAAAGAAAGAAGCATCACGAATGAAATGGGCTTCAGTGATGACTTCTCTTTTCTTGAAAGCCAAGAGAGATGTGAAGAAGAACTTTTTCAGCTGCTTACAAATATTTTGAATTATGTTATGTGTAAAGGACTAGAAAAGTCTGATGAAGACACTTGGATTGAAAGAGGACAGGTGTTTTCAGCACTAACTAAGCCAGGAATATCAAGTGAGCTGCTTCGACCCTCAGATGAAGTAAAACTAACTTTGCTACAGAAGATGTTAGAGTGGGCAATCACAGAAAATAGAGATGCAAAAAGTAGTCCTGTAACTGCTGAAAATGCCTTCCGACTCATGTTGATCGTACAAGACTTTCTGCAATCAGAAGGACTGGTTAATTCAAACATGTGGACTGAGAAGCTTTTAGAAGATGCCACGCAGCTCCTAGACTGTCTGTCAGTATGGTATTCTGAGAATCCAGCATGGGTAAAACTCTCTCAGATTCAGACCCAGCTGCTTCTAGAGTTCATCGGAAGAGGCAGTTTGCAG
Peptide sequence:
MPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKLFTKLISAGTQDSEWGCPTSLEGQLGSVIIFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSNILLHYTGKACKNSICLDLSANCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQTSEAMSENTVPELVTPSEQECMGLASTRASESRLEKNLIATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGSQMDVNVLMAIQLLIEQVSLEKNTLLLQQMYQCLLFDFRIWNRGDFPFQIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGSTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLLFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGIGLLLNEAPVNTSLIKNLVNQIINTDPVINFKDLLSVVYICHRTHVNVRVVLCRKILQILQSQPDAAYQISQQVGWQDTFVRLFLKANFENVNSLNKHGKTVSMKENKNMSTEDVKRNFEKLDDEKMMLADVSSDHWSLEDSQSLNSNTPLFQEDSSEGELSFKSENQEEFWHSNTSHLSLDLSGIDACELSDSGSQVPDSSPSTPSPVESTKSFSLQSDKERSITNEMGFSDDFSFLESQERCEEELFQLLTNILNYVMCKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLTLLQKMLEWAITENRDAKSSPVTAENAFRLMLIVQDFLQSEGLVNSNMWTEKLLEDATQLLDCLSVWYSENPAWVKLSQIQTQLLLEFIGRGSLQHNITIVHMPGKRPFGQSLVYIYDNGQQKVSAPLRFPAMNEPFTSCCIGSAGQRTTTPPPSQIPDPPFSTPITPHRTSFGGILSSASWGGTIEKSKLFTKLISAGTQDSEWGCPTSLEGQLGSVIIFHEALQPPQVKALYLAGPNCLSPWKCQDCDMADLPSNILLHYTGKACKNSICLDLSANCLHGRLTGNKVVNWDIKDIINCIGGLNVLFPLLEQISHFSEGQTSEAMSENTVPELVTPSEQECMGLASTRASESRLEKNLIATFILIVKHFIQRHPINQDNLIQSHGVATLGALLQKVPGSQMDVNVLMAIQLLIEQVSLEKNTLLLQQMYQCLLFDFRIWNRGDFPFQIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRIYYGHGSTCNELSPDDIRTIRTSLYGLIKYFLCKGGTHEEIQSIIGYIAATNEEEQLFGILDILFSLLRTSPTRGQLFLLLFEPGNADILYALLLNQKYSDKLREIIFKVMEQMLKCTNVYERSKQRIRLREVGYSGIGLLLNEAPVNTSLIKNLVNQIINTDPVINFKDLLSVVYICHRTHVNVRVVLCRKILQILQSQPDAAYQISQQVGWQDTFVRLFLKANFENVNSLNKHGKTVSMKENKNMSTEDVKRNFEKLDDEKMMLADVSSDHWSLEDSQSLNSNTPLFQEDSSEGELSFKSENQEEFWHSNTSHLSLDLSGIDACELSDSGSQVPDSSPSTPSPVESTKSFSLQSDKERSITNEMGFSDDFSFLESQERCEEELFQLLTNILNYVMCKGLEKSDEDTWIERGQVFSALTKPGISSELLRPSDEVKLTLLQKMLEWAITENRDAKSSPVTAENAFRLMLIVQDFLQSEGLVNSNMWTEKLLEDATQLLDCLSVWYSENPAWVKLSQIQTQLLLEFIGRGSLQ
IRESfinder result
IRESfinder score
0.780158326
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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