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mmu_circNbeal1_1683
Basic information of circular RNA
PanCircBase ID:
mmu_circNbeal1_1683
mm39_Chr. Position ID:
chr1|60320405|60358991|+
Gene name:
Nbeal1
Transcript:
ENSMUST00000160834.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
14
Exon/intron indexes:
39,40,41,42,43,44,45,46,47,48,49,50,51,52
Exon/intron offsets:
0,578,2736,6064,8668,10587,11620,14632,24028,28957,29680,30904,38070,38424
Genomic length:
38586
Exon/intron sizes in nt:
9,61,25,14,11,31,11,01,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr1:60318959-60320405|chr1:60358991-60367218
Splice length:
1683
Other database IDs:
circAtlas: mmu-Nbeal1_0047
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
AAATGGGTGAATAGAGAGATAACAAACTTTGACTACCTCATTCAAATAAATACCATGGCAGGACGAACCTATAATGACCTTGCACAGTACCCTGTGTTTCCCTGGATTTTGCAAGATTATACTTCAGAAGAGTTGGACCTAAATAACCCTACTGTATTTCGAGATCTTTCTAAACCAATTGGAGTAGTTAATGAAAAAAATGCCAAAGCTATGCGTGAAAAGTACGAGAATTTTGAAGACCCAATGGGAACAATTGATAAGTTTCACTATGGTACTCACTATTCCAATTCTGCGGGCGTCATGCACTATCTGATCCGCGTGGAGCCATTCACCACCCTCCACATCCAGCTTCAGAGTGGACGGTTTGACTGTGCAGACCGGCAATTCCATTCCATCCCTGCTACCTGGCAGGCACTTATGGATAATACATATGATGTTAAAGAACTTATTCCTGAATTCTTCTATTTCCCAGAGTTTCTAGAAAATCAAAATGAATTTAATTTGGGTCACTTACAAGTTTCCAAAGAACTGGTTAACGATGTTATTCTTCCAAGATGGGCTAAGTCAGCTGAAGATTTCATTTATAAACACAGAAAAGCTCTGGAGTCTGAATATGTTTCTGCTCATCTTCATGAATGGATAGATCTGATCTTTGGCTACAAACAGAGAGGGCCAGCTGCGGTGGAGGCACTCAATGTCTTCTATTACTGTAGTTATGAAGGTGCTGTAGATCTTGATGCCTTAACAGATGAAAAGGAAAGAAAAGCCTTAGAAGGGATGATTAATAATTTTGGGCAAACACCTTGTCAGCTGTTAAAGGAACCACACCCTCCAAGATTATCAGCAGAAGAAGCTATTCAAAAGCAAACCAAAACAGAAATTTCAACCCTAAACCTCTTTCAACACCTCACTGAACTGAAGTCATTTTTTATAGAGGGAATTAGTGATGGTATTCCACTATTAAAGGCCATCATCCCCAAAAATCAGTCTCGTTCTTTTATGTCTCAAGGCAGCCCTGAGTTACTGATAACAGTAAGCATGAATTATGTTATTGGAACCCATGGATGGCTACCATATGACAGAAATATTTCTAACTATTTCACATTCATCAAGGATCAAACTGTGACCAACCCAAAAGCTCAGCGCACCATTAGTGGTCCTTTTGCCCCAGGACTGGAAATCACTTCCAAACTGTTTGTAGTGTCACATGATGCAAAGTTGCTCTTCAGTGCTGGACACTGGGATAATAGTATCCAAGTAATGTCACTTACCAAAGGCAAAATTGTCTCACATAACATCCGACATATAGATATTGTGACTTGCTTAGCTACAGATTACTGTGGAATACACTTGATTTCTGGCTCCAGGGACACTACATGCATGATATGGCAAATAACACAGCAGGGAGGCACTCCTGTGGGCTTAGCACCTAAACCTTTTCAAATTCTCTATGGACACACTGATGAGATACTGAGCGTGGGTATCAGCACTGAACTCGACATGGCAGTATCAGGGTCAAGGGATGGCACTGTGATTATACATACCGTTCAGAAAGGTCAGTACATGAGAACCTTACGACTGCCTTGTGAGAGTTCCCTGTTCCTGACAATTCCCAGTTTGGCCATATCCTGGGAAGGACACATTGTTGTCTATTCCAGCTTGGAAGAAAAGTCCGTCCTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCCATATCCTGGGAAGGA
60.03
CAGGGTACTGTGCAAGGTCA
59.6
159
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCCATATCCTGGGAAGGAC
59.6
CAGGGTACTGTGCAAGGTCA
59.6
158
PCR template sequence:
TTGTGAGAGTTCCCTGTTCCTGACAATTCCCAGTTTGGCCATATCCTGGGAAGGACACATTGTTGTCTATTCCAGCTTGGAAGAAAAGTCCGTCCTCAAGAAATGGGTGAATAGAGAGATAACAAACTTTGACTACCTCATTCAAATAAATACCATGGCAGGACGAACCTATAATGACCTTGCACAGTACCCTGTGTTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-let-7a-5p(1), mmu-miR-27a-3p(1), mmu-miR-199a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-101a-3p(1), mmu-miR-205-5p(1), mmu-let-7c-5p(1), mmu-miR-328-3p(1), mmu-miR-101b-3p(1), mmu-miR-196a-5p(1), mmu-miR-128-3p(1), mmu-let-7d-5p(1), mmu-miR-494-3p(1), mmu-miR-467b-5p(1), mmu-miR-340-5p(1), mmu-miR-383-5p(1), mmu-miR-98-5p(1), mmu-miR-802-5p(1), mmu-miR-335-3p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
GTCCGTCCTCAAGAAATGGGTGAATA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCNBEAL1_1683_ORF_1
0.8143
0.062662667
0.999999999
3312
ORF sequence:
ATGGCAGGACGAACCTATAATGACCTTGCACAGTACCCTGTGTTTCCCTGGATTTTGCAAGATTATACTTCAGAAGAGTTGGACCTAAATAACCCTACTGTATTTCGAGATCTTTCTAAACCAATTGGAGTAGTTAATGAAAAAAATGCCAAAGCTATGCGTGAAAAGTACGAGAATTTTGAAGACCCAATGGGAACAATTGATAAGTTTCACTATGGTACTCACTATTCCAATTCTGCGGGCGTCATGCACTATCTGATCCGCGTGGAGCCATTCACCACCCTCCACATCCAGCTTCAGAGTGGACGGTTTGACTGTGCAGACCGGCAATTCCATTCCATCCCTGCTACCTGGCAGGCACTTATGGATAATACATATGATGTTAAAGAACTTATTCCTGAATTCTTCTATTTCCCAGAGTTTCTAGAAAATCAAAATGAATTTAATTTGGGTCACTTACAAGTTTCCAAAGAACTGGTTAACGATGTTATTCTTCCAAGATGGGCTAAGTCAGCTGAAGATTTCATTTATAAACACAGAAAAGCTCTGGAGTCTGAATATGTTTCTGCTCATCTTCATGAATGGATAGATCTGATCTTTGGCTACAAACAGAGAGGGCCAGCTGCGGTGGAGGCACTCAATGTCTTCTATTACTGTAGTTATGAAGGTGCTGTAGATCTTGATGCCTTAACAGATGAAAAGGAAAGAAAAGCCTTAGAAGGGATGATTAATAATTTTGGGCAAACACCTTGTCAGCTGTTAAAGGAACCACACCCTCCAAGATTATCAGCAGAAGAAGCTATTCAAAAGCAAACCAAAACAGAAATTTCAACCCTAAACCTCTTTCAACACCTCACTGAACTGAAGTCATTTTTTATAGAGGGAATTAGTGATGGTATTCCACTATTAAAGGCCATCATCCCCAAAAATCAGTCTCGTTCTTTTATGTCTCAAGGCAGCCCTGAGTTACTGATAACAGTAAGCATGAATTATGTTATTGGAACCCATGGATGGCTACCATATGACAGAAATATTTCTAACTATTTCACATTCATCAAGGATCAAACTGTGACCAACCCAAAAGCTCAGCGCACCATTAGTGGTCCTTTTGCCCCAGGACTGGAAATCACTTCCAAACTGTTTGTAGTGTCACATGATGCAAAGTTGCTCTTCAGTGCTGGACACTGGGATAATAGTATCCAAGTAATGTCACTTACCAAAGGCAAAATTGTCTCACATAACATCCGACATATAGATATTGTGACTTGCTTAGCTACAGATTACTGTGGAATACACTTGATTTCTGGCTCCAGGGACACTACATGCATGATATGGCAAATAACACAGCAGGGAGGCACTCCTGTGGGCTTAGCACCTAAACCTTTTCAAATTCTCTATGGACACACTGATGAGATACTGAGCGTGGGTATCAGCACTGAACTCGACATGGCAGTATCAGGGTCAAGGGATGGCACTGTGATTATACATACCGTTCAGAAAGGTCAGTACATGAGAACCTTACGACTGCCTTGTGAGAGTTCCCTGTTCCTGACAATTCCCAGTTTGGCCATATCCTGGGAAGGACACATTGTTGTCTATTCCAGCTTGGAAGAAAAGTCCGTCCTCAAGAAATGGGTGAATAGAGAGATAACAAACTTTGACTACCTCATTCAAATAAATACCATGGCAGGACGAACCTATAATGACCTTGCACAGTACCCTGTGTTTCCCTGGATTTTGCAAGATTATACTTCAGAAGAGTTGGACCTAAATAACCCTACTGTATTTCGAGATCTTTCTAAACCAATTGGAGTAGTTAATGAAAAAAATGCCAAAGCTATGCGTGAAAAGTACGAGAATTTTGAAGACCCAATGGGAACAATTGATAAGTTTCACTATGGTACTCACTATTCCAATTCTGCGGGCGTCATGCACTATCTGATCCGCGTGGAGCCATTCACCACCCTCCACATCCAGCTTCAGAGTGGACGGTTTGACTGTGCAGACCGGCAATTCCATTCCATCCCTGCTACCTGGCAGGCACTTATGGATAATACATATGATGTTAAAGAACTTATTCCTGAATTCTTCTATTTCCCAGAGTTTCTAGAAAATCAAAATGAATTTAATTTGGGTCACTTACAAGTTTCCAAAGAACTGGTTAACGATGTTATTCTTCCAAGATGGGCTAAGTCAGCTGAAGATTTCATTTATAAACACAGAAAAGCTCTGGAGTCTGAATATGTTTCTGCTCATCTTCATGAATGGATAGATCTGATCTTTGGCTACAAACAGAGAGGGCCAGCTGCGGTGGAGGCACTCAATGTCTTCTATTACTGTAGTTATGAAGGTGCTGTAGATCTTGATGCCTTAACAGATGAAAAGGAAAGAAAAGCCTTAGAAGGGATGATTAATAATTTTGGGCAAACACCTTGTCAGCTGTTAAAGGAACCACACCCTCCAAGATTATCAGCAGAAGAAGCTATTCAAAAGCAAACCAAAACAGAAATTTCAACCCTAAACCTCTTTCAACACCTCACTGAACTGAAGTCATTTTTTATAGAGGGAATTAGTGATGGTATTCCACTATTAAAGGCCATCATCCCCAAAAATCAGTCTCGTTCTTTTATGTCTCAAGGCAGCCCTGAGTTACTGATAACAGTAAGCATGAATTATGTTATTGGAACCCATGGATGGCTACCATATGACAGAAATATTTCTAACTATTTCACATTCATCAAGGATCAAACTGTGACCAACCCAAAAGCTCAGCGCACCATTAGTGGTCCTTTTGCCCCAGGACTGGAAATCACTTCCAAACTGTTTGTAGTGTCACATGATGCAAAGTTGCTCTTCAGTGCTGGACACTGGGATAATAGTATCCAAGTAATGTCACTTACCAAAGGCAAAATTGTCTCACATAACATCCGACATATAGATATTGTGACTTGCTTAGCTACAGATTACTGTGGAATACACTTGATTTCTGGCTCCAGGGACACTACATGCATGATATGGCAAATAACACAGCAGGGAGGCACTCCTGTGGGCTTAGCACCTAAACCTTTTCAAATTCTCTATGGACACACTGATGAGATACTGAGCGTGGGTATCAGCACTGAACTCGACATGGCAGTATCAGGGTCAAGGGATGGCACTGTGATTATACATACCGTTCAGAAAGGTCAGTACATGAGAACCTTACGACTGCCTTGTGAGAGTTCCCTGTTCCTGACAATTCCCAGTTTGGCCATATCCTGGGAAGGACACATTGTTGTCTATTCCAGCTTGGAAGAAAAGTCCGTCCTCAAG
Peptide sequence:
MAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGHLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNLFQHLTELKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTISGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQVMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLAPKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTVQKGQYMRTLRLPCESSLFLTIPSLAISWEGHIVVYSSLEEKSVLKKWVNREITNFDYLIQINTMAGRTYNDLAQYPVFPWILQDYTSEELDLNNPTVFRDLSKPIGVVNEKNAKAMREKYENFEDPMGTIDKFHYGTHYSNSAGVMHYLIRVEPFTTLHIQLQSGRFDCADRQFHSIPATWQALMDNTYDVKELIPEFFYFPEFLENQNEFNLGHLQVSKELVNDVILPRWAKSAEDFIYKHRKALESEYVSAHLHEWIDLIFGYKQRGPAAVEALNVFYYCSYEGAVDLDALTDEKERKALEGMINNFGQTPCQLLKEPHPPRLSAEEAIQKQTKTEISTLNLFQHLTELKSFFIEGISDGIPLLKAIIPKNQSRSFMSQGSPELLITVSMNYVIGTHGWLPYDRNISNYFTFIKDQTVTNPKAQRTISGPFAPGLEITSKLFVVSHDAKLLFSAGHWDNSIQVMSLTKGKIVSHNIRHIDIVTCLATDYCGIHLISGSRDTTCMIWQITQQGGTPVGLAPKPFQILYGHTDEILSVGISTELDMAVSGSRDGTVIIHTVQKGQYMRTLRLPCESSLFLTIPSLAISWEGHIVVYSSLEEKSVLK
IRESfinder result
IRESfinder score
0.688169001
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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