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mmu_circNars_169
Basic information of circular RNA
PanCircBase ID:
mmu_circNars_169
mm39_Chr. Position ID:
chr18|64643523|64644771|-
Gene name:
Nars
Transcript:
ENSMUST00000237400.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
6,5
Exon/intron offsets:
0,1158
Genomic length:
1248
Exon/intron sizes in nt:
79,90
Flanking exon/introns:
chr18:64642386-64643523|chr18:64644771-64644855
Splice length:
169
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCAGAAGATAACTTACGAAGAGAAAAGAACCTGGAGGAAGCAAAAAAAATTATTATTAAAAATGACCCGAGCCTGCCAGAGCCGGCCTGTGTAAAGATTAGTGCATTAGAAGGATACAGAGGCCAGAGAGTGAAGGTGTTTGGCTGGGTCCACAGGTTGCGCAGGCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGGCCAGAGAGTGAAGGT
59.88
GGCAGGCTCGGGTCATTTTT
61.25
129
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGGCCAGAGAGTGAAGGTG
59.75
GGCAGGCTCGGGTCATTTTT
61.25
128
PCR template sequence:
CCTGTGTAAAGATTAGTGCATTAGAAGGATACAGAGGCCAGAGAGTGAAGGTGTTTGGCTGGGTCCACAGGTTGCGCAGGCAAGGCAGAAGATAACTTACGAAGAGAAAAGAACCTGGAGGAAGCAAAAAAAATTATTATTAAAAATGACCCGAGCCTGCCAGAGCCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TTGCGCAGGCAAGGCAGAAGATAACT
siRNA sets
AGTTATCTTCTGCCTTGCC, TATCTTCTGCCTTGCCTGC, TTATCTTCTGCCTTGCCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.303458797
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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