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mmu_circNaaa_705
Basic information of circular RNA
PanCircBase ID:
mmu_circNaaa_705
mm39_Chr. Position ID:
chr5|92407412|92420429|-
Gene name:
Naaa
Transcript:
ENSMUST00000113102.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
10,9,8,7,6,5,4,3
Exon/intron offsets:
0,1798,2955,3856,4037,5527,8488,12890
Genomic length:
13017
Exon/intron sizes in nt:
7,82,96,76,31,73,77,91,000
Flanking exon/introns:
chr5:92406802-92407412|chr5:92420429-92424777
Splice length:
705
Other database IDs:
circAtlas: mmu-Naaa_0005
Human Ortholog IDs:
Mature spliced Sequence:
ATTCTGCACCAGTATTGTGGCCCAAGACTCCCAAGGCCATATTTACCACGGCCGGAACCTGGACTATCCTTTTGGAAAAATCTTACGAAAGCTGACAGCGAACGTGCAGTTTATAAAGAATGGGCAGATTGCATTCACTGGGACCACTTTTGTTGGCTATGTAGGACTGTGGACAGGCCAAAGTCCACACAAGTTTACAATTTCTGGTGATGAACGAGATAAAGGCTGGTGGTGGGAGAATATGATCGCGGCGCTTTCTCTGGGACACTCCCCCATCAGCTGGCTTATCCGCAAAACCCTGAGTGAGTCAGAAAGCTTCGAAGCAGCTGTCTACACGCTGGCCAAGACTCCCCTCATTGCTGACGTTTATTACATTGTTGGGGGTACATCGCCCAAGGAGGGAGTAGTCATCACCAGGGACCGAGGTGGCCCGGCAGACATTTGGCCTCTTGACCCTCTGAATGGAGAGTGGTTCCGAGTTGAGACAAATTATGACCATTGGAAGCCTGCACCCAAGGTGGATGACCGAAGAACACCAGCCATCAAAGCCCTAAATGCTACAGGGCAAGCTCACCTCAATCTGGAGACCCTCTTCCAGGTTTTATCCCTGTTTCCTGTTTATAACAACTACACAATTTATACTACAGTGATGAGCGCTGCCGAGCCCGACAAGTACCTGACCATGATCAGAAACCCGAGCTGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCCCGACAAGTACCTGAC
60.11
CGCTGTCAGCTTTCGTAAGA
58.3
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCCCGACAAGTACCTGAC
60.11
CGCTGTCAGCTTTCGTAAGAT
58.74
144
PCR template sequence:
CCCTGTTTCCTGTTTATAACAACTACACAATTTATACTACAGTGATGAGCGCTGCCGAGCCCGACAAGTACCTGACCATGATCAGAAACCCGAGCTGAAGATTCTGCACCAGTATTGTGGCCCAAGACTCCCAAGGCCATATTTACCACGGCCGGAACCTGGACTATCCTTTTGGAAAAATCTTACGAAAGCTGACAGCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-138-5p(1), mmu-miR-153-3p(1), mmu-miR-669d-5p(1), mmu-miR-490-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ACCCGAGCTGAAGATTCTGCACCAGT
siRNA sets
TGCAGAATCTTCAGCTCGG, CAGAATCTTCAGCTCGGGT, TGGTGCAGAATCTTCAGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.47450288
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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