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mmu_circMyo3a_2607
Basic information of circular RNA
PanCircBase ID:
mmu_circMyo3a_2607
mm39_Chr. Position ID:
chr2|22412120|22492274|+
Gene name:
Myo3a
Transcript:
ENSMUST00000044749.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
19,20,21,22,23,24,25,26,27,28,29,30,31,32,33
Exon/intron offsets:
0,15907,22336,24252,26144,26665,36106,42882,45580,52121,55232,57604,77973,79001,80010
Genomic length:
80154
Exon/intron sizes in nt:
14,51,54,89,13,08,07,80,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:22404783-22412120|chr2:22492274-22508060
Splice length:
2607
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGGGGATGAGGAGCTAAACATCGGCATTCTTGACATATTCGGCTTTGAAAACTTCAAAAGAAATTCCTTTGAGCAGCTGTGCATTAACATTGCAAATGAACAGATCCAGTATTATTTTAATCAGCACGTGTTTGCATGGGAGCAGAATGAATACCTAAATGAAGATGTAGATGCTAGAGTTATTGAATACGAAGACAACCGGCCCCTCTTGGACATGTTTCTACAGAAGCCCATGGGCTTATTGTCTCTGCTTGATGAGGAAAGCAGATTTCCCAAGGCCACTGACCAGACTCTCATAGAAAAATTTGAAGACAACCTGAAGTCACAGTACTTCTGGAGACCCAAAAGAATGGAACTCAGTTTTGGCATTCACCACTATGCAGGAAAAGTCCTCTATAGTGCTAGTGGGTTCTTGGCTAAAAACAGAGACACTTTCCCAACTGATATTGTGCTGCTTTTGAGGTCATCAGAAAACAGTGTAATTCGGCAACTTGTCAACCACCCTCTGACCAAAACAGGTAATCTGCCACTTTCTAAAACTAAAAACATAGTAAACTATCAGATGTGGAATTCAGAGAAATCCACAAACCTGACCAAGGGTGAAACTAGAGATGTCACATGCCATGCCTGTGAAACCACCAATGTGAAAACACAAACGGTCTCATCCTATTTTAGATACTCCTTGATGGATTTATTATCTAAAATGGTAGTGGGCCAACCTCATTTTGTCCGTTGCATCAAACCAAATAATGAGCGACAGGCAAGAAAGTATGACAAGGAGAAAGTTCTGCTCCAGCTGCGTTGCACAGGGATTTTGGAAACAGCAAGAATTCGAAGGCTTGGTTATTCACATCGGATACTCTTCGCTAACTTTATAAAGAGGTATTACATTCTCTGCTACAAATCGAGTGAAGAGCCCCCAGTGAGCCCAGACACCTGTGCTGCCATTTTGGAAAAGGCTGGTCTTGATAACTGGGCTCTTGGAAAAACGAAAGTGTTCCTTAAATATTATCATGTGGAACAGTTGAATCTAATGCGAAAGGAAGCTACCAACAAGCTTGTTTTGATTCAAGCCAGTGTCAGAGCATTCTTGGGTGCAAGAAGATACCAAGAACTTCAGCAGAAGAGGAAGAGTAGTGCTGTAATAATACAGTCAGCTGCAAGAAGACATCTCTTGCGAAAACATGGAAAAGAAACATCTAATGTGAAAAGTGCAGCAGGAAGGAGCATTCGGGCTAAGGATCAGGAATTTGACTACAAGAAAAATTTTGAAACCAAAAGGGAATCTTTTGTGAAGAAACAGACAGAAAACGCAGTGCCTACTAATGAATCCAACACTTCAACTCCAAACAACAAAGAGAGCCCATCTGCTGGGAAGACAGCTCCCTTCAGAGCAGAGTCAAAGGCCACCAATGTTGAGAGTAACAACAGAAGATACCATACTCAGAAGAAAATGAGCAATGTGTATGCAGAAGGACAGAATCAAGAGCTATATATTGTGGAGGACACTTGGGCAGAAGTAAGCCCCAGGCAGAAGTATGTGCAAGACCTGGAAGAAAGCAGAAAGATGAGGAAAGAGGAGAAAGGAGATGCTGTGATCCAGAGTTACTGTCAGTGGTACACAGAGGGAAGCAACTTTGAAGAATCAAAAGCAACATGTCTAGAAGGAAGGGAGACATGGGAAAGGACAAGCTGCCCAGGGCTGTGGCTGACTGAGGAGATTTACCTGAGAAAAACTTTGGATCCTACTCTTAGCCAAAAGTCAGTCTATCAAAATGCAGATGGCAAAGAAAAAGAACATAAAGTATCTGTGGTTACCCAGAATGCACCGCTGGGCAACCTGGAGAGAGACTATCACTTGCTAGGGTTCCTTGGAGAAGAAGACACTGGACCAGTGCCTCAGGCCCAGGAAGAACACAAGGCTGTGTCCATTCATAGCAAATACCAGAGTTCCAAGAAAAAGCAACAGCTGGGAAAGGACAGGCTGGCACCTCCCTTTAAGAATCAAAAGATCCTTTCATCGTCCACAGAAGTAGCAAAAACCACTCACAATGTCTATCCCTGTCCGACAAAGCAGGAGGGAGTCCATCATAGCAAGATGGTGGATGAGAGAGACTCAAAAATGGCTTCAAAAAAAGAAGCGTGGGATTTAGCAATGTTTTCAAGACAGATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAGGTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCATAAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAGTCAAGGGAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAATTTTTGCCTACTCATTACGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACTGAAGGAACCCCAGGCTCAACCCATTGAGAGTAATGAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCATTACGGACCCAAGGCAC
60.04
ATGCACAGCTGCTCAAAGGA
60.25
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCATTACGGACCCAAGGCAC
60.04
TGCACAGCTGCTCAAAGGAA
60.47
173
PCR template sequence:
TTTTGCCTACTCATTACGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACTGAAGGAACCCCAGGCTCAACCCATTGAGAGTAATGAGAGTGGGGATGAGGAGCTAAACATCGGCATTCTTGACATATTCGGCTTTGAAAACTTCAAAAGAAATTCCTTTGAGCAGCTGTGCATTAACATTGCAAATGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-29b-2-5p(3), mmu-miR-140-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-429-3p(1), mmu-miR-15b-5p(1), mmu-miR-27a-5p(1), mmu-miR-207(1), mmu-miR-673-5p(1), mmu-miR-369-3p(1), mmu-miR-540-3p(1), mmu-miR-1904(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGTAATGAGAGTGGGGATGAGGAG
siRNA sets
CATCCCCACTCTCATTACT, ATCCCCACTCTCATTACTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMYO3A_2607_ORF_1
0.6969
0.09960875
1
4998
ORF sequence:
ATGTTTCTACAGAAGCCCATGGGCTTATTGTCTCTGCTTGATGAGGAAAGCAGATTTCCCAAGGCCACTGACCAGACTCTCATAGAAAAATTTGAAGACAACCTGAAGTCACAGTACTTCTGGAGACCCAAAAGAATGGAACTCAGTTTTGGCATTCACCACTATGCAGGAAAAGTCCTCTATAGTGCTAGTGGGTTCTTGGCTAAAAACAGAGACACTTTCCCAACTGATATTGTGCTGCTTTTGAGGTCATCAGAAAACAGTGTAATTCGGCAACTTGTCAACCACCCTCTGACCAAAACAGGTAATCTGCCACTTTCTAAAACTAAAAACATAGTAAACTATCAGATGTGGAATTCAGAGAAATCCACAAACCTGACCAAGGGTGAAACTAGAGATGTCACATGCCATGCCTGTGAAACCACCAATGTGAAAACACAAACGGTCTCATCCTATTTTAGATACTCCTTGATGGATTTATTATCTAAAATGGTAGTGGGCCAACCTCATTTTGTCCGTTGCATCAAACCAAATAATGAGCGACAGGCAAGAAAGTATGACAAGGAGAAAGTTCTGCTCCAGCTGCGTTGCACAGGGATTTTGGAAACAGCAAGAATTCGAAGGCTTGGTTATTCACATCGGATACTCTTCGCTAACTTTATAAAGAGGTATTACATTCTCTGCTACAAATCGAGTGAAGAGCCCCCAGTGAGCCCAGACACCTGTGCTGCCATTTTGGAAAAGGCTGGTCTTGATAACTGGGCTCTTGGAAAAACGAAAGTGTTCCTTAAATATTATCATGTGGAACAGTTGAATCTAATGCGAAAGGAAGCTACCAACAAGCTTGTTTTGATTCAAGCCAGTGTCAGAGCATTCTTGGGTGCAAGAAGATACCAAGAACTTCAGCAGAAGAGGAAGAGTAGTGCTGTAATAATACAGTCAGCTGCAAGAAGACATCTCTTGCGAAAACATGGAAAAGAAACATCTAATGTGAAAAGTGCAGCAGGAAGGAGCATTCGGGCTAAGGATCAGGAATTTGACTACAAGAAAAATTTTGAAACCAAAAGGGAATCTTTTGTGAAGAAACAGACAGAAAACGCAGTGCCTACTAATGAATCCAACACTTCAACTCCAAACAACAAAGAGAGCCCATCTGCTGGGAAGACAGCTCCCTTCAGAGCAGAGTCAAAGGCCACCAATGTTGAGAGTAACAACAGAAGATACCATACTCAGAAGAAAATGAGCAATGTGTATGCAGAAGGACAGAATCAAGAGCTATATATTGTGGAGGACACTTGGGCAGAAGTAAGCCCCAGGCAGAAGTATGTGCAAGACCTGGAAGAAAGCAGAAAGATGAGGAAAGAGGAGAAAGGAGATGCTGTGATCCAGAGTTACTGTCAGTGGTACACAGAGGGAAGCAACTTTGAAGAATCAAAAGCAACATGTCTAGAAGGAAGGGAGACATGGGAAAGGACAAGCTGCCCAGGGCTGTGGCTGACTGAGGAGATTTACCTGAGAAAAACTTTGGATCCTACTCTTAGCCAAAAGTCAGTCTATCAAAATGCAGATGGCAAAGAAAAAGAACATAAAGTATCTGTGGTTACCCAGAATGCACCGCTGGGCAACCTGGAGAGAGACTATCACTTGCTAGGGTTCCTTGGAGAAGAAGACACTGGACCAGTGCCTCAGGCCCAGGAAGAACACAAGGCTGTGTCCATTCATAGCAAATACCAGAGTTCCAAGAAAAAGCAACAGCTGGGAAAGGACAGGCTGGCACCTCCCTTTAAGAATCAAAAGATCCTTTCATCGTCCACAGAAGTAGCAAAAACCACTCACAATGTCTATCCCTGTCCGACAAAGCAGGAGGGAGTCCATCATAGCAAGATGGTGGATGAGAGAGACTCAAAAATGGCTTCAAAAAAAGAAGCGTGGGATTTAGCAATGTTTTCAAGACAGATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAGGTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCATAAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAGTCAAGGGAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAATTTTTGCCTACTCATTACGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACTGAAGGAACCCCAGGCTCAACCCATTGAGAGTAATGAGAGTGGGGATGAGGAGCTAAACATCGGCATTCTTGACATATTCGGCTTTGAAAACTTCAAAAGAAATTCCTTTGAGCAGCTGTGCATTAACATTGCAAATGAACAGATCCAGTATTATTTTAATCAGCACGTGTTTGCATGGGAGCAGAATGAATACCTAAATGAAGATGTAGATGCTAGAGTTATTGAATACGAAGACAACCGGCCCCTCTTGGACATGTTTCTACAGAAGCCCATGGGCTTATTGTCTCTGCTTGATGAGGAAAGCAGATTTCCCAAGGCCACTGACCAGACTCTCATAGAAAAATTTGAAGACAACCTGAAGTCACAGTACTTCTGGAGACCCAAAAGAATGGAACTCAGTTTTGGCATTCACCACTATGCAGGAAAAGTCCTCTATAGTGCTAGTGGGTTCTTGGCTAAAAACAGAGACACTTTCCCAACTGATATTGTGCTGCTTTTGAGGTCATCAGAAAACAGTGTAATTCGGCAACTTGTCAACCACCCTCTGACCAAAACAGGTAATCTGCCACTTTCTAAAACTAAAAACATAGTAAACTATCAGATGTGGAATTCAGAGAAATCCACAAACCTGACCAAGGGTGAAACTAGAGATGTCACATGCCATGCCTGTGAAACCACCAATGTGAAAACACAAACGGTCTCATCCTATTTTAGATACTCCTTGATGGATTTATTATCTAAAATGGTAGTGGGCCAACCTCATTTTGTCCGTTGCATCAAACCAAATAATGAGCGACAGGCAAGAAAGTATGACAAGGAGAAAGTTCTGCTCCAGCTGCGTTGCACAGGGATTTTGGAAACAGCAAGAATTCGAAGGCTTGGTTATTCACATCGGATACTCTTCGCTAACTTTATAAAGAGGTATTACATTCTCTGCTACAAATCGAGTGAAGAGCCCCCAGTGAGCCCAGACACCTGTGCTGCCATTTTGGAAAAGGCTGGTCTTGATAACTGGGCTCTTGGAAAAACGAAAGTGTTCCTTAAATATTATCATGTGGAACAGTTGAATCTAATGCGAAAGGAAGCTACCAACAAGCTTGTTTTGATTCAAGCCAGTGTCAGAGCATTCTTGGGTGCAAGAAGATACCAAGAACTTCAGCAGAAGAGGAAGAGTAGTGCTGTAATAATACAGTCAGCTGCAAGAAGACATCTCTTGCGAAAACATGGAAAAGAAACATCTAATGTGAAAAGTGCAGCAGGAAGGAGCATTCGGGCTAAGGATCAGGAATTTGACTACAAGAAAAATTTTGAAACCAAAAGGGAATCTTTTGTGAAGAAACAGACAGAAAACGCAGTGCCTACTAATGAATCCAACACTTCAACTCCAAACAACAAAGAGAGCCCATCTGCTGGGAAGACAGCTCCCTTCAGAGCAGAGTCAAAGGCCACCAATGTTGAGAGTAACAACAGAAGATACCATACTCAGAAGAAAATGAGCAATGTGTATGCAGAAGGACAGAATCAAGAGCTATATATTGTGGAGGACACTTGGGCAGAAGTAAGCCCCAGGCAGAAGTATGTGCAAGACCTGGAAGAAAGCAGAAAGATGAGGAAAGAGGAGAAAGGAGATGCTGTGATCCAGAGTTACTGTCAGTGGTACACAGAGGGAAGCAACTTTGAAGAATCAAAAGCAACATGTCTAGAAGGAAGGGAGACATGGGAAAGGACAAGCTGCCCAGGGCTGTGGCTGACTGAGGAGATTTACCTGAGAAAAACTTTGGATCCTACTCTTAGCCAAAAGTCAGTCTATCAAAATGCAGATGGCAAAGAAAAAGAACATAAAGTATCTGTGGTTACCCAGAATGCACCGCTGGGCAACCTGGAGAGAGACTATCACTTGCTAGGGTTCCTTGGAGAAGAAGACACTGGACCAGTGCCTCAGGCCCAGGAAGAACACAAGGCTGTGTCCATTCATAGCAAATACCAGAGTTCCAAGAAAAAGCAACAGCTGGGAAAGGACAGGCTGGCACCTCCCTTTAAGAATCAAAAGATCCTTTCATCGTCCACAGAAGTAGCAAAAACCACTCACAATGTCTATCCCTGTCCGACAAAGCAGGAGGGAGTCCATCATAGCAAGATGGTGGATGAGAGAGACTCAAAAATGGCTTCAAAAAAAGAAGCGTGGGATTTAGCAATGTTTTCAAGACAGATATCAAAGTTATCTGAAGAGTATTTCATTCTGCAGAAAAACTTGAATGAAATTATTTTGGCCCAGCAACTGAAGCCATTTTATCTAGGTATCTATCGCCATAAACCAATCAACAGACATGTTTCTACTCACCAATACCTCTCAGGTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCATAAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAGTCAAGGGAAGTTATTAGGTTTGGAAGATTTCTATTATAAGGAATTTTTGCCTACTCATTACGGACCCAAGGCACATAGCTCTAATGCAAGAGAATGGAAAGCACTGAAGGAACCCCAGGCTCAACCCATTGAGAGTAATGAG
Peptide sequence:
MFLQKPMGLLSLLDEESRFPKATDQTLIEKFEDNLKSQYFWRPKRMELSFGIHHYAGKVLYSASGFLAKNRDTFPTDIVLLLRSSENSVIRQLVNHPLTKTGNLPLSKTKNIVNYQMWNSEKSTNLTKGETRDVTCHACETTNVKTQTVSSYFRYSLMDLLSKMVVGQPHFVRCIKPNNERQARKYDKEKVLLQLRCTGILETARIRRLGYSHRILFANFIKRYYILCYKSSEEPPVSPDTCAAILEKAGLDNWALGKTKVFLKYYHVEQLNLMRKEATNKLVLIQASVRAFLGARRYQELQQKRKSSAVIIQSAARRHLLRKHGKETSNVKSAAGRSIRAKDQEFDYKKNFETKRESFVKKQTENAVPTNESNTSTPNNKESPSAGKTAPFRAESKATNVESNNRRYHTQKKMSNVYAEGQNQELYIVEDTWAEVSPRQKYVQDLEESRKMRKEEKGDAVIQSYCQWYTEGSNFEESKATCLEGRETWERTSCPGLWLTEEIYLRKTLDPTLSQKSVYQNADGKEKEHKVSVVTQNAPLGNLERDYHLLGFLGEEDTGPVPQAQEEHKAVSIHSKYQSSKKKQQLGKDRLAPPFKNQKILSSSTEVAKTTHNVYPCPTKQEGVHHSKMVDERDSKMASKKEAWDLAMFSRQISKLSEEYFILQKNLNEIILAQQLKPFYLGIYRHKPINRHVSTHQYLSGVSKGEEPKILRPPRRPRKPKTLNNPEDSTYYYLLHKSTQEEKRRPGKDSQGKLLGLEDFYYKEFLPTHYGPKAHSSNAREWKALKEPQAQPIESNESGDEELNIGILDIFGFENFKRNSFEQLCINIANEQIQYYFNQHVFAWEQNEYLNEDVDARVIEYEDNRPLLDMFLQKPMGLLSLLDEESRFPKATDQTLIEKFEDNLKSQYFWRPKRMELSFGIHHYAGKVLYSASGFLAKNRDTFPTDIVLLLRSSENSVIRQLVNHPLTKTGNLPLSKTKNIVNYQMWNSEKSTNLTKGETRDVTCHACETTNVKTQTVSSYFRYSLMDLLSKMVVGQPHFVRCIKPNNERQARKYDKEKVLLQLRCTGILETARIRRLGYSHRILFANFIKRYYILCYKSSEEPPVSPDTCAAILEKAGLDNWALGKTKVFLKYYHVEQLNLMRKEATNKLVLIQASVRAFLGARRYQELQQKRKSSAVIIQSAARRHLLRKHGKETSNVKSAAGRSIRAKDQEFDYKKNFETKRESFVKKQTENAVPTNESNTSTPNNKESPSAGKTAPFRAESKATNVESNNRRYHTQKKMSNVYAEGQNQELYIVEDTWAEVSPRQKYVQDLEESRKMRKEEKGDAVIQSYCQWYTEGSNFEESKATCLEGRETWERTSCPGLWLTEEIYLRKTLDPTLSQKSVYQNADGKEKEHKVSVVTQNAPLGNLERDYHLLGFLGEEDTGPVPQAQEEHKAVSIHSKYQSSKKKQQLGKDRLAPPFKNQKILSSSTEVAKTTHNVYPCPTKQEGVHHSKMVDERDSKMASKKEAWDLAMFSRQISKLSEEYFILQKNLNEIILAQQLKPFYLGIYRHKPINRHVSTHQYLSGVSKGEEPKILRPPRRPRKPKTLNNPEDSTYYYLLHKSTQEEKRRPGKDSQGKLLGLEDFYYKEFLPTHYGPKAHSSNAREWKALKEPQAQPIESNE
IRESfinder result
IRESfinder score
0.573279957
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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