top of page

mmu_circMyo1d_824

Basic information of circular RNA
PanCircBase ID:

mmu_circMyo1d_824

mm39_Chr. Position ID:

chr11|80557400|80567764|-

Gene name:

Myo1d

Transcript:

ENSMUST00000041065.14

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

6

Exon/intron indexes:

12,11,10,9,8,7

Exon/intron offsets:

0,4274,8039,8242,9476,10247

Genomic length:

10364

Exon/intron sizes in nt:

71,17,11,15,14,62,04,100

Flanking exon/introns:

chr11:80553941-80557400|chr11:80567764-80570845

Splice length:

824

Other database IDs:

circAtlas: mmu-Myo1d_0035

CIRCpedia: HSA_CIRCpedia_352299

Human Ortholog IDs:
Mature spliced Sequence:

TCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGGCTGTTATTCTTCACTTGGGAAATTTAAAATTTATAGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATCGACAAACAGCACACGGAACAGGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAGGCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTATGACACCACGATACATGGGAAAAACACGGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAGCTTTGAGCAGTTCTGCATTAACTACTGCAACGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGGGAGGGCATCCCTTGGAAACACATTGATTACTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGACGGAATGTTCCTTGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGTCATTATGCGGGTGACGTGGT

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TTCCAGCCGAAAGACCTGTG

60.25

ACACAGTTTGAATCTCCTCAGGT

59.61

172

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

CGAAAGACCTGTGCCTCAGA

59.68

ACACAGTTTGAATCTCCTCAGGT

59.61

165

PCR template sequence:

GCAAACATGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGTCATTATGCGGGTGACGTGGTTCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

9

Interacting miRNAs (#binding sites)

mmu-miR-181a-5p(1), mmu-miR-29b-3p(1), mmu-miR-29a-3p(1), mmu-miR-29c-3p(1), mmu-miR-320-3p(1), mmu-miR-181b-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-1198-5p(1)

siRNAs for circular RNA silencing
Junction sequence

CGGGTGACGTGGTTCTTCCATCAATG

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCMYO1D_824_ORF_1

1.2738

0.380149556

0.989334177

816

ORF sequence:

ATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGGCTGTTATTCTTCACTTGGGAAATTTAAAATTTATAGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATCGACAAACAGCACACGGAACAGGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAGGCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTATGACACCACGATACATGGGAAAAACACGGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAGCTTTGAGCAGTTCTGCATTAACTACTGCAACGAGAAACTGCAGCAGCTCTTCATTCAGCTGGTGCTGAAGCAGGAGCAAGAGGAGTACCAGCGGGAGGGCATCCCTTGGAAACACATTGATTACTTCAACAACCAGATCATTGTGGACCTCGTGGAGCAGCAGCACAAAGGCATCATTGCAATCCTGGATGACGCGTGTATGAATGTTGGCAAAGTCACTGACGGAATGTTCCTTGAGGCCCTTAACAGTAAATTGGGCAAACATGGTCATTTTTCCAGCCGAAAGACCTGTGCCTCAGACAAAATCCTGGAGTTTGATCGGGACTTTCGAATCCGTCATTATGCGGGTGACGTGGTTCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAG

Peptide sequence:

MKVIGFKPEEIQTVYKILAVILHLGNLKFIVDGDTPLIENGKVVSVIAELLSTKADMVEKALLYRTVATGRDIIDKQHTEQEASYGRDAFAKAIYERLFCWIVTRINDIIEVKNYDTTIHGKNTVIGVLDIYGFEIFDNNSFEQFCINYCNEKLQQLFIQLVLKQEQEEYQREGIPWKHIDYFNNQIIVDLVEQQHKGIIAILDDACMNVGKVTDGMFLEALNSKLGKHGHFSSRKTCASDKILEFDRDFRIRHYAGDVVLPSMTLLSSKL

IRESfinder result

IRESfinder score

0.520325401

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page