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mmu_circMyh9_1131
Basic information of circular RNA
PanCircBase ID:
mmu_circMyh9_1131
mm39_Chr. Position ID:
chr15|77655324|77660134|-
Gene name:
Myh9
Transcript:
ENSMUST00000016771.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
27,26,25,24,23,22,21
Exon/intron offsets:
0,699,2147,2810,3432,3949,4678
Genomic length:
4810
Exon/intron sizes in nt:
14,52,13,17,21,24,13,80,00,000
Flanking exon/introns:
chr15:77654173-77655324|chr15:77660134-77661090
Splice length:
1131
Other database IDs:
circBase: hsa_circ_0063114
Human Ortholog IDs:
Mature spliced Sequence:
GTCAAGCCCCTGTTGAACTCAATAAGACATGAGGATGAGCTGTTAGCCAAGGAGGCGGAACTGACAAAGGTTCGAGAGAAACATCTGGCTGCAGAGAACAGGCTGACAGAGATGGAGACGATGCAGTCTCAGCTCATGGCAGAGAAGCTGCAGCTTCAGGAGCAGCTGCAGGCGGAGACAGAGCTGTGTGCCGAGGCTGAGGAGCTCCGGGCCCGTCTGACAGCGAAGAAGCAGGAGCTGGAGGAGATCTGCCATGACCTGGAGGCCAGGGTGGAGGAGGAGGAGGAGCGCTGCCAGTACCTGCAGGCCGAGAAGAAGAAGATGCAGCAGAACATCCAGGAACTTGAGGAGCAGTTGGAGGAGGAGGAGAGCGCCCGGCAGAAGCTGCAGCTTGAGAAGGTGACCACCGAGGCCAAGCTGAAGAAACTGGAGGAGGACCAGATCATCATGGAGGACCAGAACTGCAAACTGGCCAAGGAGAAGAAACTGCTGGAAGACAGAGTAGCTGAATTCACTACCAACCTCATGGAAGAGGAGGAGAAGTCCAAGAGCCTGGCCAAGCTCAAGAACAAGCACGAGGCAATGATCACCGACCTGGAAGAGCGCCTCCGTAGGGAGGAGAAGCAGAGGCAGGAGTTGGAGAAGACCCGTCGCAAGCTGGAGGGAGACTCCACAGACCTCAGTGACCAGATTGCTGAGCTCCAGGCGCAGATAGCAGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGTTGCAGGCTGCCTTGGCCAGAGTGGAAGAAGAAGCTGCTCAGAAGAATATGGCCCTGAAGAAGATCCGAGAACTGGAAACTCAGATCTCTGAGCTCCAGGAGGACCTGGAGTCGGAGCGAGCCTCCAGGAATAAAGCCGAGAAGCAGAAACGGGATCTGGGAGAGGAGCTGGAGGCGCTGAAGACAGAGCTGGAGGACACGCTGGACTCCACGGCTGCCCAGCAGGAGCTGAGGTCGAAGCGTGAGCAGGAGGTGAGCATCCTGAAGAAGACTCTGGAGGACGAGGCCAAGACCCATGAGGCCCAGATCCAGGAGATGAGGCAGAAGCACTCACAGGCTGTGGAGGAGCTGGCAGATCAGTTGGAGCAGACGAAGCGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGAGATGAGGCAGAAGC
60.18
AACCTTTGTCAGTTCCGCCT
59.82
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGAGATGAGGCAGAAGC
60.18
CGAACCTTTGTCAGTTCCGC
59.77
144
PCR template sequence:
GGACGAGGCCAAGACCCATGAGGCCCAGATCCAGGAGATGAGGCAGAAGCACTCACAGGCTGTGGAGGAGCTGGCAGATCAGTTGGAGCAGACGAAGCGGGTCAAGCCCCTGTTGAACTCAATAAGACATGAGGATGAGCTGTTAGCCAAGGAGGCGGAACTGACAAAGGTTCGAGAGAAACATCTGGCTGCAGAGAACA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-207(5), mmu-miR-127-5p(1), mmu-miR-370-3p(1), mmu-miR-3470b(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
GCAGACGAAGCGGGTCAAGCCCCTGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMYH9_1131_ORF_1
1.1937
0.76612363
0.999999828
2151
ORF sequence:
ATGGAGACGATGCAGTCTCAGCTCATGGCAGAGAAGCTGCAGCTTCAGGAGCAGCTGCAGGCGGAGACAGAGCTGTGTGCCGAGGCTGAGGAGCTCCGGGCCCGTCTGACAGCGAAGAAGCAGGAGCTGGAGGAGATCTGCCATGACCTGGAGGCCAGGGTGGAGGAGGAGGAGGAGCGCTGCCAGTACCTGCAGGCCGAGAAGAAGAAGATGCAGCAGAACATCCAGGAACTTGAGGAGCAGTTGGAGGAGGAGGAGAGCGCCCGGCAGAAGCTGCAGCTTGAGAAGGTGACCACCGAGGCCAAGCTGAAGAAACTGGAGGAGGACCAGATCATCATGGAGGACCAGAACTGCAAACTGGCCAAGGAGAAGAAACTGCTGGAAGACAGAGTAGCTGAATTCACTACCAACCTCATGGAAGAGGAGGAGAAGTCCAAGAGCCTGGCCAAGCTCAAGAACAAGCACGAGGCAATGATCACCGACCTGGAAGAGCGCCTCCGTAGGGAGGAGAAGCAGAGGCAGGAGTTGGAGAAGACCCGTCGCAAGCTGGAGGGAGACTCCACAGACCTCAGTGACCAGATTGCTGAGCTCCAGGCGCAGATAGCAGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGTTGCAGGCTGCCTTGGCCAGAGTGGAAGAAGAAGCTGCTCAGAAGAATATGGCCCTGAAGAAGATCCGAGAACTGGAAACTCAGATCTCTGAGCTCCAGGAGGACCTGGAGTCGGAGCGAGCCTCCAGGAATAAAGCCGAGAAGCAGAAACGGGATCTGGGAGAGGAGCTGGAGGCGCTGAAGACAGAGCTGGAGGACACGCTGGACTCCACGGCTGCCCAGCAGGAGCTGAGGTCGAAGCGTGAGCAGGAGGTGAGCATCCTGAAGAAGACTCTGGAGGACGAGGCCAAGACCCATGAGGCCCAGATCCAGGAGATGAGGCAGAAGCACTCACAGGCTGTGGAGGAGCTGGCAGATCAGTTGGAGCAGACGAAGCGGGTCAAGCCCCTGTTGAACTCAATAAGACATGAGGATGAGCTGTTAGCCAAGGAGGCGGAACTGACAAAGGTTCGAGAGAAACATCTGGCTGCAGAGAACAGGCTGACAGAGATGGAGACGATGCAGTCTCAGCTCATGGCAGAGAAGCTGCAGCTTCAGGAGCAGCTGCAGGCGGAGACAGAGCTGTGTGCCGAGGCTGAGGAGCTCCGGGCCCGTCTGACAGCGAAGAAGCAGGAGCTGGAGGAGATCTGCCATGACCTGGAGGCCAGGGTGGAGGAGGAGGAGGAGCGCTGCCAGTACCTGCAGGCCGAGAAGAAGAAGATGCAGCAGAACATCCAGGAACTTGAGGAGCAGTTGGAGGAGGAGGAGAGCGCCCGGCAGAAGCTGCAGCTTGAGAAGGTGACCACCGAGGCCAAGCTGAAGAAACTGGAGGAGGACCAGATCATCATGGAGGACCAGAACTGCAAACTGGCCAAGGAGAAGAAACTGCTGGAAGACAGAGTAGCTGAATTCACTACCAACCTCATGGAAGAGGAGGAGAAGTCCAAGAGCCTGGCCAAGCTCAAGAACAAGCACGAGGCAATGATCACCGACCTGGAAGAGCGCCTCCGTAGGGAGGAGAAGCAGAGGCAGGAGTTGGAGAAGACCCGTCGCAAGCTGGAGGGAGACTCCACAGACCTCAGTGACCAGATTGCTGAGCTCCAGGCGCAGATAGCAGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGTTGCAGGCTGCCTTGGCCAGAGTGGAAGAAGAAGCTGCTCAGAAGAATATGGCCCTGAAGAAGATCCGAGAACTGGAAACTCAGATCTCTGAGCTCCAGGAGGACCTGGAGTCGGAGCGAGCCTCCAGGAATAAAGCCGAGAAGCAGAAACGGGATCTGGGAGAGGAGCTGGAGGCGCTGAAGACAGAGCTGGAGGACACGCTGGACTCCACGGCTGCCCAGCAGGAGCTGAGGTCGAAGCGTGAGCAGGAGGTGAGCATCCTGAAGAAGACTCTGGAGGACGAGGCCAAGACCCATGAGGCCCAGATCCAGGAGATGAGGCAGAAGCACTCACAGGCTGTGGAGGAGCTGGCAGATCAGTTGGAGCAGACGAAGCGG
Peptide sequence:
METMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLEDRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLEDEAKTHEAQIQEMRQKHSQAVEELADQLEQTKRVKPLLNSIRHEDELLAKEAELTKVREKHLAAENRLTEMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCKLAKEKKLLEDRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVEEEAAQKNMALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTELEDTLDSTAAQQELRSKREQEVSILKKTLEDEAKTHEAQIQEMRQKHSQAVEELADQLEQTKR
IRESfinder result
IRESfinder score
0.184181437
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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