top of page
mmu_circMvk_240
Basic information of circular RNA
PanCircBase ID:
mmu_circMvk_240
mm39_Chr. Position ID:
chr5|114583448|114584367|+
Gene name:
Mvk
Transcript:
ENSMUST00000137167.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,4
Exon/intron offsets:
0,771
Genomic length:
919
Exon/intron sizes in nt:
92,148
Flanking exon/introns:
chr5:114582750-114583448|chr5:114584367-114588337
Splice length:
240
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
AAGTCTCAGAAGCCATGTTGTCAGAAGCCCTGCTGGTGTCCGCCCCGGGGAAGGTCATCCTCCATGGAGAACACGCTGTGGTCCATGGCAAGGTCGCTCTGGCAGCGGCCTTGAACTTGAGAACTTTCCTCCTGCTGCGACCGCAGAGCAATGGGAAAGTGAGCGTCAATTTACCCAACATCGGTATTAAGCAGGTGTGGGATGTGGGCATGCTTCAGCGACTGGACACGAGCTTTCTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAATGGGAAAGTGAGCGTC
59.83
ACAGCGTGTTCTCCATGGAG
60.04
172
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CGCAGAGCAATGGGAAAGTG
59.83
ACAGCGTGTTCTCCATGGAG
60.04
178
PCR template sequence:
CCGCAGAGCAATGGGAAAGTGAGCGTCAATTTACCCAACATCGGTATTAAGCAGGTGTGGGATGTGGGCATGCTTCAGCGACTGGACACGAGCTTTCTTGAAGTCTCAGAAGCCATGTTGTCAGAAGCCCTGCTGGTGTCCGCCCCGGGGAAGGTCATCCTCCATGGAGAACACGCTGTGGTCCATGGCAAGGTCGCTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACGAGCTTTCTTGAAGTCTCAGAAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMVK_240_ORF_1
1.1621
0.351725384
0.845587071
465
ORF sequence:
ATGTTGTCAGAAGCCCTGCTGGTGTCCGCCCCGGGGAAGGTCATCCTCCATGGAGAACACGCTGTGGTCCATGGCAAGGTCGCTCTGGCAGCGGCCTTGAACTTGAGAACTTTCCTCCTGCTGCGACCGCAGAGCAATGGGAAAGTGAGCGTCAATTTACCCAACATCGGTATTAAGCAGGTGTGGGATGTGGGCATGCTTCAGCGACTGGACACGAGCTTTCTTGAAGTCTCAGAAGCCATGTTGTCAGAAGCCCTGCTGGTGTCCGCCCCGGGGAAGGTCATCCTCCATGGAGAACACGCTGTGGTCCATGGCAAGGTCGCTCTGGCAGCGGCCTTGAACTTGAGAACTTTCCTCCTGCTGCGACCGCAGAGCAATGGGAAAGTGAGCGTCAATTTACCCAACATCGGTATTAAGCAGGTGTGGGATGTGGGCATGCTTCAGCGACTGGACACGAGCTTTCTT
Peptide sequence:
MLSEALLVSAPGKVILHGEHAVVHGKVALAAALNLRTFLLLRPQSNGKVSVNLPNIGIKQVWDVGMLQRLDTSFLEVSEAMLSEALLVSAPGKVILHGEHAVVHGKVALAAALNLRTFLLLRPQSNGKVSVNLPNIGIKQVWDVGMLQRLDTSFL
IRESfinder result
IRESfinder score
0.357179901
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page