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mmu_circMtus1_367
Basic information of circular RNA
PanCircBase ID:
mmu_circMtus1_367
mm39_Chr. Position ID:
chr8|41501084|41529464|-
Gene name:
Mtus1
Transcript:
ENSMUST00000059115.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,1937,28184
Genomic length:
28380
Exon/intron sizes in nt:
3,91,32,196
Flanking exon/introns:
chr8:41475631-41501084|chr8:41529464-41535650
Splice length:
367
Other database IDs:
circAtlas: hsa-MTUS1_0019, CIRCpedia: HSA_CIRCpedia_154588
Human Ortholog IDs:
Mature spliced Sequence:
GGCTCTGCACCCAAAACTTCCACCACGCCAGGAAGGAGCAGTTCCAAGCCAGACTCGCGGAGCCTGAGGAAAACACCAGGTCTAAAAGCCAAAGTGGGTCCCACTGCTGCCTGCCTGAGGAGGAAGAGTGAGAGTAGAACCCTAGGCTCCGACAGGGCCTTATCGCCTCAGAGGATCAGGCGCGTGTCCGGCTCTGGTGGTCATGCTGCCATCAACAAATATGAAGAGAAACCTCCCAAACAAGCATTTCAGAATGGGTCAGGACCCTTGTATCTGAAGCCTTTGGTACCCAGAGCTCACTCGCACTTGCTCAAAACTTCTCCAAAAGGTCCTTCAAGGAAGAGTCTGTTTACAGCTTTTAATTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCCTTTGGTACCCAGAGC
59.96
AGTCTGGCTTGGAACTGCTC
59.96
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCCTTTGGTACCCAGAGC
59.96
GAGTCTGGCTTGGAACTGCT
59.96
147
PCR template sequence:
TTGTATCTGAAGCCTTTGGTACCCAGAGCTCACTCGCACTTGCTCAAAACTTCTCCAAAAGGTCCTTCAAGGAAGAGTCTGTTTACAGCTTTTAATTCAGGGCTCTGCACCCAAAACTTCCACCACGCCAGGAAGGAGCAGTTCCAAGCCAGACTCGCGGAGCCTGAGGAAAACACCAGGTCTAAAAGCCAAAGTGGGTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-203-3p(1), mmu-miR-381-3p(1), mmu-miR-107-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCTTTTAATTCAGGGCTCTGCACCCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.590455289
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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