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mmu_circMtmr4_3348
Basic information of circular RNA
PanCircBase ID:
mmu_circMtmr4_3348
mm39_Chr. Position ID:
chr11|87484214|87504358|+
Gene name:
Mtmr4
Transcript:
ENSMUST00000103179.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
16
Exon/intron indexes:
2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17
Exon/intron offsets:
0,3807,4226,5474,7115,7385,7670,9019,9391,9999,10598,11029,11293,11607,17544,20033
Genomic length:
20144
Exon/intron sizes in nt:
45,90,11,78,31,61,97,10,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr11:87483076-87484214|chr11:87504358-87504597
Splice length:
3348
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGACGAGCAGGAGCAGGCAGCCAGGACCCTCGCCAAGGTAGAATGGGTGAGGAGGGCCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTGGTGAAGGAGGAGGAGAATCTTCAGGTACCCTTCACAGTGCTGCAGGGTGAGGGAGTGGAATTCCTGGGCCGGGCAACCGATGCCCTCATTGCCATCTCTAACTACCGGCTGCACATCAAGTTCAAAGACTCTGTCATCAACGTGCCCCTCCGGATGATTGACAGTGTGGAAAGCCGTGATATGTTTCAGTTGCACATTGCCTGCAAGGACTCCAAAGTGGTGAGGTGCCACTTCTCTACTTTCAAGCAGTGCCAAGAGTGGCTCTCAAGGCTAAGCCGGGCCACAGCGAGACCTGCCAAGCCCGAGGATCTCTTTGCCTTTGCCTACCATGCGTGGTGCCTGGGGCTGACCGAGGAGGACCAGCATACCCACCTGTGCCAGCCAGGAGAGCACATCCGATGTCGACAGGAGGCAGAGCTCGCAAGGATGGGTTTTGACCTGCAGAATGTCTGGAGAGTCTCGCATATCAACAGCAATTACAAGCTGTGCCCTAGTTACCCCCAGAAGCTGCTGGTTCCTGTGTGGATCACAGATAAAGAGCTGGAGAACGTGGCTTCTTTCCGCTCTTGGAAACGCATCCCTGTTGTGGTATACAGACACCTGCGCAACGGGGCTGCCATTGCTCGCTGCAGCCAGCCTGAGATCAGCTGGTGGGGCTGGCGCAATGCTGATGATGAATACCTCGTCACGTCCATTGCCAAAGCCTGCGCCTTAGACCCAGGGACAAGGGCCAGTGGGGGCTCCCTCAGCACTGGGACTAATGATGCCAGTGAGGCATGTGACACAGATTTCGATTCTTCTCTGACTGCATGCTCTGGGGTGGAGAGCACAGCAGCCCCACAGAAACTGCTGATCCTGGATGCACGGTCCTACACAGCAGCCGTGGCTAACCGGGCCAAGGGTGGAGGCTGTGAATGTGAAGAATACTATCCGAACTGTGAGGTCTTGTTTATGGGAATGGCCAACATCCACGCCATCCGGAATAGCTTCCAGTACCTCCGGGCTGTGTGTAGCCAGATGCCAGATCCCAGCAACTGGTTGTCGGCACTGGAGAGTACCAAATGGCTGCAGCACTTGTCAGTGATGCTAAAAGCAGCTGTGTTGGTAGCCAATACGGTAGATCGGGAAGGCCGGCCTGTGCTGGTACACTGCTCTGACGGCTGGGACCGTACACCACAGATTGTAGCCCTGGCCAAAATACTACTGGATCCATATTACAGGACTCTGGAGGGCTTCCAAGTGTTAGTGGAGTCTGATTGGCTGGATTTCGGACACAAGTTTGGAGACCGCTGTGGCCATCAGGAAAATGCAGAGGACCAAAATGAACAGTGTCCTGTGTTCCTCCAGTGGCTTGATTCCGTGCATCAGCTGCTTAAGCAGTTCCCCTGCCTGTTTGAGTTCAATGAAGCATTTCTGGTAAAGCTGGTGCAGCACACATACTCGTGTCTCTACGGCACATTCCTGGCCAACAACCCCTGCGAGCGAGAGAAGCGCAACATCTATAAACGGACGTGCTCTGTGTGGGCACTCCTGCGAGCTGGCAACAAGAACTTTCATAACTTCCTCTATACACCTGGTTCAGACGTGGTCCTGCATCCTGTGTGTCATGTCCGGGCCCTGCACCTCTGGACAGCTGTTTATCTGCCTGCGTCATCTCCATGCACCCTTGGAGAGGAAAATATGGATCTTTACCTTTCCCCAGTGGCTCAGAGCCAGGAATTTTCTGGTCGTTCTCTGGACAGGTTACCTAAAACCAGATCCATGGATGATCTGCTCTCTGCCTGTGATACAAGCAGCCCCCTCACTCGTACTTCCAGCGACCCTAACCTGAATAACCACTCTCAGGAGGTCAGAGGCAGCCTGGAGCCCTGGCACAGCAGTCCTGAAGGAGCAGAGACAGTCATAGACTCTGGAGTTGGAAGCCCACAGCTGACTGTGGGAGAAATGGGCCTTCCTCCTCCTCTGCCCAGTAGCCAGAAAGAGTACTTGAGCAATAAACCTTTCAAGGGTCATAAAAGTTGTTCTCTTAGTTATAAGTTGCTTAATACTTCTGTGTCCTGGGAAATGAAGAGCAACACCTCTGACATCAAGGTCCTGGAAGAAACTGAAGCACTGGCCCCGGACCCTTCAGCCCAAGAGGAGCAGGGTAGGACTTCTGATGGCTTAGGGAAGCCACCTGAACAGTTTCTAGAGAAGGAAGCTGTCAGCTCACTCTGCAGTGTCTCTAGCAAGTGTGGTGGAGCCTGTGATTTTCCTGAGCCTCCCCAGGACCCCCTAACAGGTACTCCCCAACAGCCCCACCTAGACTCCATGCAGATCTCGCCCTCAAGGTGCACTCCAGATCACAGTCAGGGCAGCCTTTGCAACCCACCAAGTGTGGCCAGCCAAACTCCAGAGCCAAATACTGACCTCCTCAGCCAAGATCCCCCTGGTTCTACGGCAAGTATCTCCCACCAGGAACAGCCTAGCTCTGTGCCGGATCTGATCTACAAGAAGGAGGATGCTGGCAAGAGAGGAAGTAAGAATGGGCAGCTGTTGGAAAATCCTCGCTTTGGAAAAATGCCATTGGAGTTGGCCCGAAAGCCAATTTCTCAGAGCCAGATCAGTGAGTTCTCATTTTTAGGGTCAAACTGGGACAGCTTCCAAGGGATGATGACTTCATTCCCAAGCGGAGAGACCACTCCTCGGCGCCTGCTTGCTTATGGCTGTTGTAGCAAGAGGCCGAGCAATAAGCATATTCGAGCTGCAGGGCCCTGCCTTGGGGGCCAGTGGGCTCAGAGAGAAGGGATGAAATCTCCTGTCTGTTCTAGTCATTCCAATGGACACTGCACAGGCCCAGGAGGGAAGAACAACCGGATGTGGTTTTCCAGTCATCCGAAGCAAGTCTCCAGCACAAAGCCTTCTCTTCTGAGCTGCCCTTCCCCAGTGCCTCCTCTCTACCTGGATGATGATGGACTCCCCTTTCCCACGGATGTGATCCAACACAGGTTACGGCAGATCGAAGCAGGGTACAGGCAAGAGGTGGAACAGCTACGGCGACAGGTTCGAGAGCTTCAGATGAGGCTAGACATTCGTCATTGCTGTGCCCCTCCAGCAGAACCCCCCATGGACTATGAGGATGACTTTACGTGTTTAAAGGAGTCAGATGGCAGTGACACTGAAGACTTTGGCTCTGATCACAGTGAAGACTGCCTTTCAGAAGCAAGCTGGGAACCCGTTGATAAGAAGGAGACTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGTCAGATGGCAGTGACA
59.39
CACCCATTCTACCTTGGCGA
59.75
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGTCAGATGGCAGTGACA
59.39
TCACCCATTCTACCTTGGCG
59.75
150
PCR template sequence:
GGAGTCAGATGGCAGTGACACTGAAGACTTTGGCTCTGATCACAGTGAAGACTGCCTTTCAGAAGCAAGCTGGGAACCCGTTGATAAGAAGGAGACTGAGTGACGAGCAGGAGCAGGCAGCCAGGACCCTCGCCAAGGTAGAATGGGTGAGGAGGGCCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
27
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-140-5p(1), mmu-miR-27b-3p(1), mmu-miR-103-3p(1), mmu-miR-298-5p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-181b-5p(1), mmu-miR-149-5p(1), mmu-miR-494-3p(1), mmu-miR-382-3p(1), mmu-miR-182-5p(1), mmu-miR-125b-1-3p(1), mmu-miR-362-5p(1), mmu-miR-107-3p(1), mmu-miR-680(1), mmu-miR-384-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-1198-5p(1), mmu-miR-466p-5p(1), mmu-miR-673-5p(1), mmu-miR-539-5p(1), mmu-miR-3087-3p(1), mmu-miR-3105-3p(1), mmu-miR-193b-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGGAGACTGAGTGACGAGCAGGAG
siRNA sets
TGCTCGTCACTCAGTCTCC, CTGCTCGTCACTCAGTCTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMTMR4_3348_ORF_1
0.7972
0.271839428
0.999999999
3309
ORF sequence:
ATGGGTGAGGAGGGCCCCCCCAGCCTGGAGTACATCCAAGCCAAGGATCTGTTCCCCCCCAAGGAACTGGTGAAGGAGGAGGAGAATCTTCAGGTACCCTTCACAGTGCTGCAGGGTGAGGGAGTGGAATTCCTGGGCCGGGCAACCGATGCCCTCATTGCCATCTCTAACTACCGGCTGCACATCAAGTTCAAAGACTCTGTCATCAACGTGCCCCTCCGGATGATTGACAGTGTGGAAAGCCGTGATATGTTTCAGTTGCACATTGCCTGCAAGGACTCCAAAGTGGTGAGGTGCCACTTCTCTACTTTCAAGCAGTGCCAAGAGTGGCTCTCAAGGCTAAGCCGGGCCACAGCGAGACCTGCCAAGCCCGAGGATCTCTTTGCCTTTGCCTACCATGCGTGGTGCCTGGGGCTGACCGAGGAGGACCAGCATACCCACCTGTGCCAGCCAGGAGAGCACATCCGATGTCGACAGGAGGCAGAGCTCGCAAGGATGGGTTTTGACCTGCAGAATGTCTGGAGAGTCTCGCATATCAACAGCAATTACAAGCTGTGCCCTAGTTACCCCCAGAAGCTGCTGGTTCCTGTGTGGATCACAGATAAAGAGCTGGAGAACGTGGCTTCTTTCCGCTCTTGGAAACGCATCCCTGTTGTGGTATACAGACACCTGCGCAACGGGGCTGCCATTGCTCGCTGCAGCCAGCCTGAGATCAGCTGGTGGGGCTGGCGCAATGCTGATGATGAATACCTCGTCACGTCCATTGCCAAAGCCTGCGCCTTAGACCCAGGGACAAGGGCCAGTGGGGGCTCCCTCAGCACTGGGACTAATGATGCCAGTGAGGCATGTGACACAGATTTCGATTCTTCTCTGACTGCATGCTCTGGGGTGGAGAGCACAGCAGCCCCACAGAAACTGCTGATCCTGGATGCACGGTCCTACACAGCAGCCGTGGCTAACCGGGCCAAGGGTGGAGGCTGTGAATGTGAAGAATACTATCCGAACTGTGAGGTCTTGTTTATGGGAATGGCCAACATCCACGCCATCCGGAATAGCTTCCAGTACCTCCGGGCTGTGTGTAGCCAGATGCCAGATCCCAGCAACTGGTTGTCGGCACTGGAGAGTACCAAATGGCTGCAGCACTTGTCAGTGATGCTAAAAGCAGCTGTGTTGGTAGCCAATACGGTAGATCGGGAAGGCCGGCCTGTGCTGGTACACTGCTCTGACGGCTGGGACCGTACACCACAGATTGTAGCCCTGGCCAAAATACTACTGGATCCATATTACAGGACTCTGGAGGGCTTCCAAGTGTTAGTGGAGTCTGATTGGCTGGATTTCGGACACAAGTTTGGAGACCGCTGTGGCCATCAGGAAAATGCAGAGGACCAAAATGAACAGTGTCCTGTGTTCCTCCAGTGGCTTGATTCCGTGCATCAGCTGCTTAAGCAGTTCCCCTGCCTGTTTGAGTTCAATGAAGCATTTCTGGTAAAGCTGGTGCAGCACACATACTCGTGTCTCTACGGCACATTCCTGGCCAACAACCCCTGCGAGCGAGAGAAGCGCAACATCTATAAACGGACGTGCTCTGTGTGGGCACTCCTGCGAGCTGGCAACAAGAACTTTCATAACTTCCTCTATACACCTGGTTCAGACGTGGTCCTGCATCCTGTGTGTCATGTCCGGGCCCTGCACCTCTGGACAGCTGTTTATCTGCCTGCGTCATCTCCATGCACCCTTGGAGAGGAAAATATGGATCTTTACCTTTCCCCAGTGGCTCAGAGCCAGGAATTTTCTGGTCGTTCTCTGGACAGGTTACCTAAAACCAGATCCATGGATGATCTGCTCTCTGCCTGTGATACAAGCAGCCCCCTCACTCGTACTTCCAGCGACCCTAACCTGAATAACCACTCTCAGGAGGTCAGAGGCAGCCTGGAGCCCTGGCACAGCAGTCCTGAAGGAGCAGAGACAGTCATAGACTCTGGAGTTGGAAGCCCACAGCTGACTGTGGGAGAAATGGGCCTTCCTCCTCCTCTGCCCAGTAGCCAGAAAGAGTACTTGAGCAATAAACCTTTCAAGGGTCATAAAAGTTGTTCTCTTAGTTATAAGTTGCTTAATACTTCTGTGTCCTGGGAAATGAAGAGCAACACCTCTGACATCAAGGTCCTGGAAGAAACTGAAGCACTGGCCCCGGACCCTTCAGCCCAAGAGGAGCAGGGTAGGACTTCTGATGGCTTAGGGAAGCCACCTGAACAGTTTCTAGAGAAGGAAGCTGTCAGCTCACTCTGCAGTGTCTCTAGCAAGTGTGGTGGAGCCTGTGATTTTCCTGAGCCTCCCCAGGACCCCCTAACAGGTACTCCCCAACAGCCCCACCTAGACTCCATGCAGATCTCGCCCTCAAGGTGCACTCCAGATCACAGTCAGGGCAGCCTTTGCAACCCACCAAGTGTGGCCAGCCAAACTCCAGAGCCAAATACTGACCTCCTCAGCCAAGATCCCCCTGGTTCTACGGCAAGTATCTCCCACCAGGAACAGCCTAGCTCTGTGCCGGATCTGATCTACAAGAAGGAGGATGCTGGCAAGAGAGGAAGTAAGAATGGGCAGCTGTTGGAAAATCCTCGCTTTGGAAAAATGCCATTGGAGTTGGCCCGAAAGCCAATTTCTCAGAGCCAGATCAGTGAGTTCTCATTTTTAGGGTCAAACTGGGACAGCTTCCAAGGGATGATGACTTCATTCCCAAGCGGAGAGACCACTCCTCGGCGCCTGCTTGCTTATGGCTGTTGTAGCAAGAGGCCGAGCAATAAGCATATTCGAGCTGCAGGGCCCTGCCTTGGGGGCCAGTGGGCTCAGAGAGAAGGGATGAAATCTCCTGTCTGTTCTAGTCATTCCAATGGACACTGCACAGGCCCAGGAGGGAAGAACAACCGGATGTGGTTTTCCAGTCATCCGAAGCAAGTCTCCAGCACAAAGCCTTCTCTTCTGAGCTGCCCTTCCCCAGTGCCTCCTCTCTACCTGGATGATGATGGACTCCCCTTTCCCACGGATGTGATCCAACACAGGTTACGGCAGATCGAAGCAGGGTACAGGCAAGAGGTGGAACAGCTACGGCGACAGGTTCGAGAGCTTCAGATGAGGCTAGACATTCGTCATTGCTGTGCCCCTCCAGCAGAACCCCCCATGGACTATGAGGATGACTTTACGTGTTTAAAGGAGTCAGATGGCAGTGACACTGAAGACTTTGGCTCTGATCACAGTGAAGACTGCCTTTCAGAAGCAAGCTGGGAACCCGTTGATAAGAAGGAGACTGAGTGA
Peptide sequence:
MGEEGPPSLEYIQAKDLFPPKELVKEEENLQVPFTVLQGEGVEFLGRATDALIAISNYRLHIKFKDSVINVPLRMIDSVESRDMFQLHIACKDSKVVRCHFSTFKQCQEWLSRLSRATARPAKPEDLFAFAYHAWCLGLTEEDQHTHLCQPGEHIRCRQEAELARMGFDLQNVWRVSHINSNYKLCPSYPQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAAIARCSQPEISWWGWRNADDEYLVTSIAKACALDPGTRASGGSLSTGTNDASEACDTDFDSSLTACSGVESTAAPQKLLILDARSYTAAVANRAKGGGCECEEYYPNCEVLFMGMANIHAIRNSFQYLRAVCSQMPDPSNWLSALESTKWLQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVALAKILLDPYYRTLEGFQVLVESDWLDFGHKFGDRCGHQENAEDQNEQCPVFLQWLDSVHQLLKQFPCLFEFNEAFLVKLVQHTYSCLYGTFLANNPCEREKRNIYKRTCSVWALLRAGNKNFHNFLYTPGSDVVLHPVCHVRALHLWTAVYLPASSPCTLGEENMDLYLSPVAQSQEFSGRSLDRLPKTRSMDDLLSACDTSSPLTRTSSDPNLNNHSQEVRGSLEPWHSSPEGAETVIDSGVGSPQLTVGEMGLPPPLPSSQKEYLSNKPFKGHKSCSLSYKLLNTSVSWEMKSNTSDIKVLEETEALAPDPSAQEEQGRTSDGLGKPPEQFLEKEAVSSLCSVSSKCGGACDFPEPPQDPLTGTPQQPHLDSMQISPSRCTPDHSQGSLCNPPSVASQTPEPNTDLLSQDPPGSTASISHQEQPSSVPDLIYKKEDAGKRGSKNGQLLENPRFGKMPLELARKPISQSQISEFSFLGSNWDSFQGMMTSFPSGETTPRRLLAYGCCSKRPSNKHIRAAGPCLGGQWAQREGMKSPVCSSHSNGHCTGPGGKNNRMWFSSHPKQVSSTKPSLLSCPSPVPPLYLDDDGLPFPTDVIQHRLRQIEAGYRQEVEQLRRQVRELQMRLDIRHCCAPPAEPPMDYEDDFTCLKESDGSDTEDFGSDHSEDCLSEASWEPVDKKETE
IRESfinder result
IRESfinder score
0.47480172
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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