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mmu_circMtarc2_591
Basic information of circular RNA
PanCircBase ID:
mmu_circMtarc2_591
mm39_Chr. Position ID:
chr1|184551397|184566225|-
Gene name:
Mtarc2
Transcript:
ENSMUST00000068725.10
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
7,6,5,4,3
Exon/intron offsets:
0,3134,3288,13375,14659
Genomic length:
14828
Exon/intron sizes in nt:
14,77,26,21,41,169
Flanking exon/introns:
chr1:184546080-184551397|chr1:184566225-184573450
Splice length:
591
Other database IDs:
circAtlas: mmu-Marc2_0003
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_30130
Human Ortholog IDs:
Mature spliced Sequence:
GCTGTTTGGTCTCGACATCAAAGGCAGAGATTGTGGCGATGAGGTAGCTCAGTGGTTCACCAACTACCTGAAGACGCAAGCCTACAGGTTGGTTCAGTTTGATACCAGCATGAAAGGAAGAACAACGAAGAAACTTTACCCTTCTGAAAGTTACCTTCAGAACTATGAGGTAGCCTACCCGGACTGCAGCCCTGTCCACCTGATTTCTGAAGCCTCCTTAGTCGATCTCAACACCAGGCTGAAGAAGAAAGTGAAGATGGAATATTTCAGGCCAAACATCGTGGTGTCAGGCTGTGAGGCTTTCGAGGAGGATACTTGGGATGAACTCCTGATTGGTGACGTGGAGATGAAAAGGGTGTTGAGCTGTCCCAGGTGCGTTCTGACTACAGTGGACCCAGACACCGGCATCATAGACAGGAAGGAGCCACTGGAGACCCTGAAGAGCTATCGCCTGTGTGATCCTTCTGTGAAGAGTATATACCAGTCATCTCCACTTTTTGGGATGTATTTCTCGGTGGAGAAGCTTGGGAGCCTGAGAGTGGGTGACCCTGTGTACCGGATGGTGGATTAGTGGATCCCATGGCTGACACG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGACCCTGTGTACCGGATG
60.11
CAACCTGTAGGCTTGCGTCT
60.32
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGACCCTGTGTACCGGATG
60.11
GAACCAACCTGTAGGCTTGC
59.12
144
PCR template sequence:
CACTTTTTGGGATGTATTTCTCGGTGGAGAAGCTTGGGAGCCTGAGAGTGGGTGACCCTGTGTACCGGATGGTGGATTAGTGGATCCCATGGCTGACACGGCTGTTTGGTCTCGACATCAAAGGCAGAGATTGTGGCGATGAGGTAGCTCAGTGGTTCACCAACTACCTGAAGACGCAAGCCTACAGGTTGGTTCAGTTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-150-5p(1), mmu-miR-377-3p(1), mmu-miR-673-5p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CATGGCTGACACGGCTGTTTGGTCTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.50098999
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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