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mmu_circMta3_285
Basic information of circular RNA
PanCircBase ID:
mmu_circMta3_285
mm39_Chr. Position ID:
chr17|84061282|84070442|+
Gene name:
Mta3
Transcript:
ENSMUST00000112350.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,6,7
Exon/intron offsets:
0,1705,9057
Genomic length:
9160
Exon/intron sizes in nt:
6,41,18,103
Flanking exon/introns:
chr17:84045884-84061282|chr17:84070442-84073935
Splice length:
285
Other database IDs:
circAtlas: mmu-Mta3_0006
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_41308
Human Ortholog IDs:
Mature spliced Sequence:
GGGGAAGTGCAGCGTGGCCCTGCTGAATGAGACAGAATCCGTGTTGTCATACCTTGACAAGGAGGATACCTTCTTCTACTCACTGGTATACGACCCTTCAGTGAAAACATTATTGGCTGACAAAGGTGAAATCAGAGTGGGCCCAAAGTACCAAGCTGACATTCCAGACATGCTACCAGAAGGAGACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCAATAGCCCACTTACGG
60.18
ACCAGTGAGTAGAAGAAGGT
55.1
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCAATAGCCCACTTACGG
60.18
ACCAGTGAGTAGAAGAAGGTATCC
59.04
141
PCR template sequence:
ACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCGGGGGAAGTGCAGCGTGGCCCTGCTGAATGAGACAGAATCCGTGTTGTCATACCTTGACAAGGAGGATACCTTCTTCTACTCACTGGTATACGACCCTTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TAGTTGTAGCCCGGGGGAAGTGCAGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMTA3_285_ORF_1
0.9584
0.239177167
0.594605615
399
ORF sequence:
ATGCTACCAGAAGGAGACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCCCGGGGGAAGTGCAGCGTGGCCCTGCTGAATGAGACAGAATCCGTGTTGTCATACCTTGACAAGGAGGATACCTTCTTCTACTCACTGGTATACGACCCTTCAGTGAAAACATTATTGGCTGACAAAGGTGAAATCAGAGTGGGCCCAAAGTACCAAGCTGACATTCCAGACATGCTACCAGAAGGAGACTCAGATGAGAGGGAACAATCAAAATTGGAAGTTAAGGTTTGGGACCCCAATAGCCCACTTACGGATCGACAGATTGACCAGTTTTTAGTTGTAGCC
Peptide sequence:
MLPEGDSDEREQSKLEVKVWDPNSPLTDRQIDQFLVVARGKCSVALLNETESVLSYLDKEDTFFYSLVYDPSVKTLLADKGEIRVGPKYQADIPDMLPEGDSDEREQSKLEVKVWDPNSPLTDRQIDQFLVVA
IRESfinder result
IRESfinder score
0.657603589
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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