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mmu_circMpp7_960
Basic information of circular RNA
PanCircBase ID:
mmu_circMpp7_960
mm39_Chr. Position ID:
chr18|7355017|7442874|-
Gene name:
Mpp7
Transcript:
ENSMUST00000115869.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
15,14,13,12,11,10,9,8,7
Exon/intron offsets:
0,1124,24971,48168,84551,85065,85414,86535,87775
Genomic length:
87857
Exon/intron sizes in nt:
109,94,81,171,65,197,75,86,82
Flanking exon/introns:
chr18:7353297-7355017|chr18:7442874-7443973
Splice length:
960
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGTGCTACCATTAAAAAAGATGAGCAGACCGGAGCAATCACTGTGGCCCGAATCATGCGGGGAGGAGCTGCAGATAGAAGTGGTCTTATTCACGTGGGTGATGAGCTGAGGGAAGTGAATGGAATCCCAGTGGAAGATAAGAGGCCTGAGGAAATAATAAAGATTTTGAGTCAGTCCAAGGGAGCAATTACATTTAAGATAATACCCAGCACCAAAGAGGAGACACCTTCGAAAGAAGGCAAGATATTTATCAAAGCCCTCTTTGACTACGATCCTAAGGAAGACAAGGCAATCCCGTGTAAAGAGGCAGGGCTGTCTTTCAGGAAGGGGGACATTCTTCAGATTATGAGCCAAGATGATGTGACATGGTGGCAGGCTAAGCATGAAGGAGATGCCAACCCCAGAGCGGGCCTGATTCCCTCCAAGCACTTCCAGGAACGGAGACTGGCTCTGAGACGACCAGAAATAGTAGTTCAGCCTCTGAAACTTTCCAACACGAAATCATCTGGTTTTAGAAGAAGTTTCCGTCTTAGCAGAAAAAATAAGAAAATAAATAAGTCCATGTATGAATGCAAAAAGAGTGAGCAGTATGACACGGCAGATGTGCCCACATATGAGGAGGTGACACCCTACCGGCGGCAGATCCATGACAAATACAGACTCATTGTCCTGGTTGGTCCTGTCGGAGTCGGGCTAAATGAGCTGAAGCGAAAGCTATTGATGAGTGATGCACAGCACTATGGTGTGATAGTGCCCCACACCACTAGAGCAAGAAGAAGCCAAGAGAGTGATGGTGTGGAATATATTTTTATTTCCAAACATTTGTTTGAGACAGATGTACAAAATAACAAGTTCATTGAGTATGGTGAATATAAAAACAACTATTATGGTACAAGTATAGACTCGGTTCGCTCTGTCCTAGCTAAGAACAAGGTTTGTCTGTTGGATGTCCAGCCTCAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TAGACTCGGTTCGCTCTGTC
58.91
TCTATCTGCAGCTCCTCCCC
60.47
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTCGGTTCGCTCTGTCCTA
60.32
ACCACTTCTATCTGCAGCTCC
59.52
143
PCR template sequence:
GTATGGTGAATATAAAAACAACTATTATGGTACAAGTATAGACTCGGTTCGCTCTGTCCTAGCTAAGAACAAGGTTTGTCTGTTGGATGTCCAGCCTCATGGTGCTACCATTAAAAAAGATGAGCAGACCGGAGCAATCACTGTGGCCCGAATCATGCGGGGAGGAGCTGCAGATAGAAGTGGTCTTATTCACGTGGGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-128-3p(1), mmu-miR-680(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-129-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTCCAGCCTCATGGTGCTACCATTA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMPP7_960_ORF_1
1.0304
0.193276867
0.999981246
1866
ORF sequence:
ATGCGGGGAGGAGCTGCAGATAGAAGTGGTCTTATTCACGTGGGTGATGAGCTGAGGGAAGTGAATGGAATCCCAGTGGAAGATAAGAGGCCTGAGGAAATAATAAAGATTTTGAGTCAGTCCAAGGGAGCAATTACATTTAAGATAATACCCAGCACCAAAGAGGAGACACCTTCGAAAGAAGGCAAGATATTTATCAAAGCCCTCTTTGACTACGATCCTAAGGAAGACAAGGCAATCCCGTGTAAAGAGGCAGGGCTGTCTTTCAGGAAGGGGGACATTCTTCAGATTATGAGCCAAGATGATGTGACATGGTGGCAGGCTAAGCATGAAGGAGATGCCAACCCCAGAGCGGGCCTGATTCCCTCCAAGCACTTCCAGGAACGGAGACTGGCTCTGAGACGACCAGAAATAGTAGTTCAGCCTCTGAAACTTTCCAACACGAAATCATCTGGTTTTAGAAGAAGTTTCCGTCTTAGCAGAAAAAATAAGAAAATAAATAAGTCCATGTATGAATGCAAAAAGAGTGAGCAGTATGACACGGCAGATGTGCCCACATATGAGGAGGTGACACCCTACCGGCGGCAGATCCATGACAAATACAGACTCATTGTCCTGGTTGGTCCTGTCGGAGTCGGGCTAAATGAGCTGAAGCGAAAGCTATTGATGAGTGATGCACAGCACTATGGTGTGATAGTGCCCCACACCACTAGAGCAAGAAGAAGCCAAGAGAGTGATGGTGTGGAATATATTTTTATTTCCAAACATTTGTTTGAGACAGATGTACAAAATAACAAGTTCATTGAGTATGGTGAATATAAAAACAACTATTATGGTACAAGTATAGACTCGGTTCGCTCTGTCCTAGCTAAGAACAAGGTTTGTCTGTTGGATGTCCAGCCTCATGGTGCTACCATTAAAAAAGATGAGCAGACCGGAGCAATCACTGTGGCCCGAATCATGCGGGGAGGAGCTGCAGATAGAAGTGGTCTTATTCACGTGGGTGATGAGCTGAGGGAAGTGAATGGAATCCCAGTGGAAGATAAGAGGCCTGAGGAAATAATAAAGATTTTGAGTCAGTCCAAGGGAGCAATTACATTTAAGATAATACCCAGCACCAAAGAGGAGACACCTTCGAAAGAAGGCAAGATATTTATCAAAGCCCTCTTTGACTACGATCCTAAGGAAGACAAGGCAATCCCGTGTAAAGAGGCAGGGCTGTCTTTCAGGAAGGGGGACATTCTTCAGATTATGAGCCAAGATGATGTGACATGGTGGCAGGCTAAGCATGAAGGAGATGCCAACCCCAGAGCGGGCCTGATTCCCTCCAAGCACTTCCAGGAACGGAGACTGGCTCTGAGACGACCAGAAATAGTAGTTCAGCCTCTGAAACTTTCCAACACGAAATCATCTGGTTTTAGAAGAAGTTTCCGTCTTAGCAGAAAAAATAAGAAAATAAATAAGTCCATGTATGAATGCAAAAAGAGTGAGCAGTATGACACGGCAGATGTGCCCACATATGAGGAGGTGACACCCTACCGGCGGCAGATCCATGACAAATACAGACTCATTGTCCTGGTTGGTCCTGTCGGAGTCGGGCTAAATGAGCTGAAGCGAAAGCTATTGATGAGTGATGCACAGCACTATGGTGTGATAGTGCCCCACACCACTAGAGCAAGAAGAAGCCAAGAGAGTGATGGTGTGGAATATATTTTTATTTCCAAACATTTGTTTGAGACAGATGTACAAAATAACAAGTTCATTGAGTATGGTGAATATAAAAACAACTATTATGGTACAAGTATAGACTCGGTTCGCTCTGTCCTAGCTAAGAACAAGGTTTGTCTGTTGGATGTCCAGCCTCAT
Peptide sequence:
MRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIKILSQSKGAITFKIIPSTKEETPSKEGKIFIKALFDYDPKEDKAIPCKEAGLSFRKGDILQIMSQDDVTWWQAKHEGDANPRAGLIPSKHFQERRLALRRPEIVVQPLKLSNTKSSGFRRSFRLSRKNKKINKSMYECKKSEQYDTADVPTYEEVTPYRRQIHDKYRLIVLVGPVGVGLNELKRKLLMSDAQHYGVIVPHTTRARRSQESDGVEYIFISKHLFETDVQNNKFIEYGEYKNNYYGTSIDSVRSVLAKNKVCLLDVQPHGATIKKDEQTGAITVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIKILSQSKGAITFKIIPSTKEETPSKEGKIFIKALFDYDPKEDKAIPCKEAGLSFRKGDILQIMSQDDVTWWQAKHEGDANPRAGLIPSKHFQERRLALRRPEIVVQPLKLSNTKSSGFRRSFRLSRKNKKINKSMYECKKSEQYDTADVPTYEEVTPYRRQIHDKYRLIVLVGPVGVGLNELKRKLLMSDAQHYGVIVPHTTRARRSQESDGVEYIFISKHLFETDVQNNKFIEYGEYKNNYYGTSIDSVRSVLAKNKVCLLDVQPH
IRESfinder result
IRESfinder score
0.455906208
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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