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mmu_circMeis2_77
Basic information of circular RNA
PanCircBase ID:
mmu_circMeis2_77
mm39_Chr. Position ID:
chr2|115752152|115752229|-
Gene name:
Meis2
Transcript:
ENSMUST00000028639.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
77
Exon/intron sizes in nt:
77
Flanking exon/introns:
chr2:115699284-115752152|chr2:115752229-115830611
Splice length:
77
Other database IDs:
circBase: hsa_circ_0034406, CIRCpedia: HSA_CIRCpedia_14022
Human Ortholog IDs:
Mature spliced Sequence:
CACCCGTACCCTTCAGAAGAACAGAAGAAACAGTTAGCGCAAGACACGGGACTGACAATTCTGCAAGTGAACAACTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGACACGGGACTGACAAT
57.83
TGTTCTTCTGAAGGGTACGGG
59.38
61
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGACACGGGACTGACAAT
57.83
GTTCTTCTGAAGGGTACGGGT
59.38
60
PCR template sequence:
CAAGACACGGGACTGACAATTCTGCAAGTGAACAACTGCACCCGTACCCTTCAGAAGAACAGAAGAAACAGTTAGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
AAGTGAACAACTGCACCCGTACCCTT
siRNA sets
TACGGGTGCAGTTGTTCAC, AAGGGTACGGGTGCAGTTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.423714309
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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