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mmu_circMed13l_85
Basic information of circular RNA
PanCircBase ID:
mmu_circMed13l_85
mm39_Chr. Position ID:
chr5|118809077|118809162|+
Gene name:
Med13l
Transcript:
ENSMUST00000201614.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
85
Exon/intron sizes in nt:
85
Flanking exon/introns:
chr5:118731635-118809077|chr5:118809162-118818952
Splice length:
85
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TTGTGGAAGAAGGACTCTGGGAAAATGGCCTTTCCTATGAATGTAGGACGCTGCTCTTCAAAGCAATCCACAATCTGTTAGAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGACGCTGCTCTTCAAAGC
60.95
GGCCATTTTCCCAGAGTCCT
59.67
71
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGACGCTGCTCTTCAAAGC
60.95
AGGCCATTTTCCCAGAGTCC
59.67
72
PCR template sequence:
TAGGACGCTGCTCTTCAAAGCAATCCACAATCTGTTAGAAAGTTGTGGAAGAAGGACTCTGGGAAAATGGCCTTTCCTATGAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ATCTGTTAGAAAGTTGTGGAAGAAGG
siRNA sets
TTCCACAACTTTCTAACAG, CTTCCACAACTTTCTAACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.348267629
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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