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mmu_circMccc1_194
Basic information of circular RNA
PanCircBase ID:
mmu_circMccc1_194
mm39_Chr. Position ID:
chr3|36037881|36039242|-
Gene name:
Mccc1
Transcript:
ENSMUST00000199113.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
9,8
Exon/intron offsets:
0,1249
Genomic length:
1361
Exon/intron sizes in nt:
82,112
Flanking exon/introns:
chr3:36033199-36037881|chr3:36039242-36043981
Splice length:
194
Other database IDs:
circAtlas: mmu-Mccc1_0003
Human Ortholog IDs:
Mature spliced Sequence:
GCATGTAGAAGTCCAGGTGTTTGGTGATCACCATGGCAACGCAGTGTACTTGTTTGAAAGAGACTGTAGTGTGCAGAGGCGACATCAGAAGATCATTGAGGAGGCCCCAGCGCCTGGTATTAATCCTGAAGTAAGAAGAAAGCTGGGAGAGGCTGCAGTCAGAGCTGCGAAGGCTGTCAAGTACGTGGGAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAAAGCTGGGAGAGGCTG
59.67
CTTCTGATGTCGCCTCTGCA
60.11
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAAAGCTGGGAGAGGCTG
59.67
ATGTCGCCTCTGCACACTAC
60.11
144
PCR template sequence:
GAGGAGGCCCCAGCGCCTGGTATTAATCCTGAAGTAAGAAGAAAGCTGGGAGAGGCTGCAGTCAGAGCTGCGAAGGCTGTCAAGTACGTGGGAGCAGGCATGTAGAAGTCCAGGTGTTTGGTGATCACCATGGCAACGCAGTGTACTTGTTTGAAAGAGACTGTAGTGTGCAGAGGCGACATCAGAAGATCATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-207(1), mmu-miR-452-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TACGTGGGAGCAGGCATGTAGAAGTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.267266971
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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