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mmu_circMagt1_91
Basic information of circular RNA
PanCircBase ID:
mmu_circMagt1_91
mm39_Chr. Position ID:
chrX|105017790|105017881|-
Gene name:
Magt1
Transcript:
ENSMUST00000033583.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
9
Exon/intron offsets:
0
Genomic length:
91
Exon/intron sizes in nt:
91
Flanking exon/introns:
chrX:105015085-105017790|chrX:105017881-105023011
Splice length:
91
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TGATGTGTATTGCTGGGATTGGACTCGTTGTGTTATTCTTCAGTTGGATGCTCTCTATCTTTCGATCAAAATACCATGGCTATCCATACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTTTCGATCAAAATACCATGGCT
58.81
CAACGAGTCCAATCCCAGCA
60.32
64
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTTTCGATCAAAATACCATGGCT
58.81
ACAACGAGTCCAATCCCAGC
60.32
65
PCR template sequence:
GATGCTCTCTATCTTTCGATCAAAATACCATGGCTATCCATACAGTGATGTGTATTGCTGGGATTGGACTCGTTGTGTTATTCTTCAGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GCTATCCATACAGTGATGTGTATTGC
siRNA sets
ACATCACTGTATGGATAGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCMAGT1_91_ORF_1
0.4255
-0.169144791
0.020861798
180
ORF sequence:
ATGTGTATTGCTGGGATTGGACTCGTTGTGTTATTCTTCAGTTGGATGCTCTCTATCTTTCGATCAAAATACCATGGCTATCCATACAGTGATGTGTATTGCTGGGATTGGACTCGTTGTGTTATTCTTCAGTTGGATGCTCTCTATCTTTCGATCAAAATACCATGGCTATCCATACAG
Peptide sequence:
MCIAGIGLVVLFFSWMLSIFRSKYHGYPYSDVYCWDWTRCVILQLDALYLSIKIPWLSIQ
IRESfinder result
IRESfinder score
0.748819812
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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