top of page
mmu_circLrba_2096
Basic information of circular RNA
PanCircBase ID:
mmu_circLrba_2096
mm39_Chr. Position ID:
chr3|86439391|86664856|+
Gene name:
Lrba
Transcript:
ENSMUST00000194759.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
16
Exon/intron indexes:
38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53
Exon/intron offsets:
0,7818,10490,73785,76263,82887,87425,109406,110568,132353,183428,204997,209320,213716,219442,225297
Genomic length:
225465
Exon/intron sizes in nt:
125,147,137,118,103,116,113,141,120,153,168,90,178,63,156,168
Flanking exon/introns:
chr3:86352780-86439391|chr3:86664856-86680406
Splice length:
2096
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
TCGTCCTCGTGAGTTCTGGCGCCTTGACTACTGGGAAGATGACTTGAGGCGCCGGCGACGATTTGTGCGTAACCCTCTAGGATCGACACATCCTGAAGCGACACTAAAAACAGCCGTGGAACATGCTGCAGATGAAGACATCCTTGCTAAAGGAAAACAGTCCATCAAGAGTCAGGCTTTAGGAAATCAGAACTCTGAAAACGAGGCCCTCCTGGAAGGCGACGACGATACTCTGTCATCCGTGGATGAGAAAGATTTAGAGAATCTTGCCGGTCCTGTTAGCCTGAGCACCCCAGCTCAGCTTGTGGCCCCCTCTGTTGTAGTAAAAGGCACTCTCTCTGTCACTTCCTCTGAACTCTATTTTGAGGTGGATGAAGAGGATCCCAACTTCAAGAAAATTGACCCAAAGATCTTGGCATATACAGAAGGTCTGCATGGAAAATGGCTGTTCACAGAGATAAGATCAATCTTTTCTCGCCGTTATCTTTTGCAAAATACAGCTCTGGAGATCTTTATGGCAAACAGAGTTGCTGTAATGTTCAACTTCCCAGACCCTGCCACAGTAAAGAAAGTGGTGAACTATCTACCTCGTGTTGGTGTGGGAACCAGTTTTGGATTACCTCAGACCAGGCGTATTTCATTAGCCACTCCACGTCAGCTATTCAAAGCTTCAAATATGACTCAGCGGTGGCAGCACAGAGAGATTTCAAACTTCGAGTACTTGATGTTTCTCAACACAATAGCAGGGCGGAGTTATAATGACCTAAATCAGTATCCTGTGTTTCCCTGGGTCATCACTAATTATGAGTCAGAAGAATTAGATCTTACCTTGCCAAGCAATTTCAGAGATTTGTCCAAGCCAATAGGAGCTTTGAATCCCAAACGAGCAGCATTCTTTGCAGAGCGATTTGAGTCATGGGAAGATGATCAAGTTCCAAAGTTCCACTATGGTACTCATTACTCAACTGCAAGTTTTGTTCTTGCGTGGCTTCTAAGAATAGAACCTTTTACAACTTACTTTCTAAATTTACAAGGAGGGAAATTTGATCATGCAGATAGGACGTTCTCCTCAGTCTCCAGAGCATGGCGAAACAGTCAGCGCGACACATCTGACATTAAGGAATTGATTCCTGAATTTTATTATCTCCCTGAGATGTTTGTCAACTTCAATAATTATAACCTTGGAGTGATGGATGATGGGACAGTGGTGTCTGATGTTGAACTTCCTCCTTGGGCCAAAACCTCGGAAGAATTCGTTCGCATAAACAGACTGGCCCTGGAGAGTGAATTTGTTTCCTGCCAGCTTCACCAATGGATTGATCTTATTTTTGGCTATAAACAACAAGGACCAGAGGCAGTGCGAGCCCTCAATGTGTTCTATTACCTAACCTATGAAGGAGCTGTCAACCTGAACTCAATAACTGATCCTGTGCTGAGAGAGGCTGTGGAAGCTCAGATCCGAAGTTTTGGACAGACGCCTTCGCAACTGCTCATAGAGCCCCACCCTCCCCGAGGTTCGGCCATGCAGGCGAGTCCATTGATGTTCACAGACCAAGCCCAGCAAGATGTCATCATGGTCCTAAAGTTCCCTTCGAATTCTCCAGTCACCCACGTTGCGGCCAACACCCAGCCAGGCCTGGCAATGCCTGCTGTCATCACTGTCACTGCTAACAGGCTCTTTGCCGTGAACAAGTGGCACAACCTTCCTGCTCACCAAGGTGCTGTACAAGACCAGCCATACCAGCTGCCAGTGGAAATCGATCCTCTCATAGCCTGCGGCACAGGGACACACAGGAGGCAGGTAACAGACCTCCTGGACCAGAGCATCCAAGTGCACTCCCAGTGCTTCGTCATCACTTCCGACAACCGCTACATTCTCGTCTGTGGCTTCTGGGATAAGAGTTTCCGGGTCTACTCCACAGATACAGGAAAATTGATCCAAGTGGTGTTTGGCCATTGGGATGTTGTCACTTGCCTAGCTCGCTCTGAGTCGTACATAGGGGGAAATTGTTACATCCTCTCGGGGTCACGTGACGCAACTCTTCTTCTGTGGTACTGGAATGGGAAGAGCAGCGGGATTGGAGATAACCCTGGCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCACGTGACGCAACTCTTCT
59.62
GGGTTACGCACAAATCGTCG
59.91
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTCACGTGACGCAACTCTTC
59.5
GGGTTACGCACAAATCGTCG
59.91
146
PCR template sequence:
ATAGGGGGAAATTGTTACATCCTCTCGGGGTCACGTGACGCAACTCTTCTTCTGTGGTACTGGAATGGGAAGAGCAGCGGGATTGGAGATAACCCTGGCGTCGTCCTCGTGAGTTCTGGCGCCTTGACTACTGGGAAGATGACTTGAGGCGCCGGCGACGATTTGTGCGTAACCCTCTAGGATCGACACATCCTGAAGCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
20
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-let-7a-5p(1), mmu-miR-103-3p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-31-5p(1), mmu-miR-26a-5p(1), mmu-let-7c-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-214-3p(1), mmu-let-7d-5p(1), mmu-miR-26b-5p(1), mmu-miR-127-5p(1), mmu-miR-411-3p(1), mmu-miR-182-5p(1), mmu-miR-324-3p(1), mmu-miR-107-3p(1), mmu-miR-98-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GATAACCCTGGCGTCGTCCTCGTGAG
siRNA sets
CTCACGAGGACGACGCCAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCLRBA_2096_ORF_1
0.8425
0.132107296
0.999800839
1629
ORF sequence:
ATGGCAAACAGAGTTGCTGTAATGTTCAACTTCCCAGACCCTGCCACAGTAAAGAAAGTGGTGAACTATCTACCTCGTGTTGGTGTGGGAACCAGTTTTGGATTACCTCAGACCAGGCGTATTTCATTAGCCACTCCACGTCAGCTATTCAAAGCTTCAAATATGACTCAGCGGTGGCAGCACAGAGAGATTTCAAACTTCGAGTACTTGATGTTTCTCAACACAATAGCAGGGCGGAGTTATAATGACCTAAATCAGTATCCTGTGTTTCCCTGGGTCATCACTAATTATGAGTCAGAAGAATTAGATCTTACCTTGCCAAGCAATTTCAGAGATTTGTCCAAGCCAATAGGAGCTTTGAATCCCAAACGAGCAGCATTCTTTGCAGAGCGATTTGAGTCATGGGAAGATGATCAAGTTCCAAAGTTCCACTATGGTACTCATTACTCAACTGCAAGTTTTGTTCTTGCGTGGCTTCTAAGAATAGAACCTTTTACAACTTACTTTCTAAATTTACAAGGAGGGAAATTTGATCATGCAGATAGGACGTTCTCCTCAGTCTCCAGAGCATGGCGAAACAGTCAGCGCGACACATCTGACATTAAGGAATTGATTCCTGAATTTTATTATCTCCCTGAGATGTTTGTCAACTTCAATAATTATAACCTTGGAGTGATGGATGATGGGACAGTGGTGTCTGATGTTGAACTTCCTCCTTGGGCCAAAACCTCGGAAGAATTCGTTCGCATAAACAGACTGGCCCTGGAGAGTGAATTTGTTTCCTGCCAGCTTCACCAATGGATTGATCTTATTTTTGGCTATAAACAACAAGGACCAGAGGCAGTGCGAGCCCTCAATGTGTTCTATTACCTAACCTATGAAGGAGCTGTCAACCTGAACTCAATAACTGATCCTGTGCTGAGAGAGGCTGTGGAAGCTCAGATCCGAAGTTTTGGACAGACGCCTTCGCAACTGCTCATAGAGCCCCACCCTCCCCGAGGTTCGGCCATGCAGGCGAGTCCATTGATGTTCACAGACCAAGCCCAGCAAGATGTCATCATGGTCCTAAAGTTCCCTTCGAATTCTCCAGTCACCCACGTTGCGGCCAACACCCAGCCAGGCCTGGCAATGCCTGCTGTCATCACTGTCACTGCTAACAGGCTCTTTGCCGTGAACAAGTGGCACAACCTTCCTGCTCACCAAGGTGCTGTACAAGACCAGCCATACCAGCTGCCAGTGGAAATCGATCCTCTCATAGCCTGCGGCACAGGGACACACAGGAGGCAGGTAACAGACCTCCTGGACCAGAGCATCCAAGTGCACTCCCAGTGCTTCGTCATCACTTCCGACAACCGCTACATTCTCGTCTGTGGCTTCTGGGATAAGAGTTTCCGGGTCTACTCCACAGATACAGGAAAATTGATCCAAGTGGTGTTTGGCCATTGGGATGTTGTCACTTGCCTAGCTCGCTCTGAGTCGTACATAGGGGGAAATTGTTACATCCTCTCGGGGTCACGTGACGCAACTCTTCTTCTGTGGTACTGGAATGGGAAGAGCAGCGGGATTGGAGATAACCCTGGCGTCGTCCTCGTGAGTTCTGGCGCCTTGACTACTGGGAAGATGACTTGA
Peptide sequence:
MANRVAVMFNFPDPATVKKVVNYLPRVGVGTSFGLPQTRRISLATPRQLFKASNMTQRWQHREISNFEYLMFLNTIAGRSYNDLNQYPVFPWVITNYESEELDLTLPSNFRDLSKPIGALNPKRAAFFAERFESWEDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSVSRAWRNSQRDTSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVRINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLMFTDQAQQDVIMVLKFPSNSPVTHVAANTQPGLAMPAVITVTANRLFAVNKWHNLPAHQGAVQDQPYQLPVEIDPLIACGTGTHRRQVTDLLDQSIQVHSQCFVITSDNRYILVCGFWDKSFRVYSTDTGKLIQVVFGHWDVVTCLARSESYIGGNCYILSGSRDATLLLWYWNGKSSGIGDNPGVVLVSSGALTTGKMT
IRESfinder result
IRESfinder score
0.611734128
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page