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mmu_circLman2l_598
Basic information of circular RNA
PanCircBase ID:
mmu_circLman2l_598
mm39_Chr. Position ID:
chr1|36463918|36478807|-
Gene name:
Lman2l
Transcript:
ENSMUST00000125304.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
7,6,5,4,3
Exon/intron offsets:
0,3264,3462,13912,14771
Genomic length:
14889
Exon/intron sizes in nt:
1,20,11,51,62,83,118
Flanking exon/introns:
chr1:36463584-36463918|chr1:36478807-36482571
Splice length:
598
Other database IDs:
circAtlas: mmu-Lman2l_0002
CIRCpedia: HSA_CIRCpedia_42716
Human Ortholog IDs:
Mature spliced Sequence:
CCATGTTTCCTGAAAGACTGGGAACTGCAGGTGCACTTCAAGATTCACGGCCAAGGGAAGAAGAATCTGCACGGAGACGGCTTGGCAATCTGGTACACAAAGGACCGAATGCAGCCAGGGCCTGTGTTTGGAAACATGGACAAATTTGTGGGGCTGGGAGTGTTTGTAGACACCTATCCCAATGAGGAGAAGCAGCACGAGCGGGTATTCCCCTACATCTCAGCCATGGTGAACAACGGCTCCCTCAGCTATGATCACGAGCGGGATGGGCGGCCTACAGAGCTGGGTGGCTGCACAGCCATTGTCCGAAATATCCGTTATGACACCTTCCTCGTGATTCGCTATGTCAAGAGGCATCTGACGATAATGATGGATATTGATGGCAAACATGAGTGGAGGGACTGCATTGAGATGCCCGGGGTCCGGCTCCCCCGGGGCTATTACTTCGGCACTTCCTCCATTACTGGGGATCTCTCTGATAACCATGATGTCATTTCCCTCAAGTTGTTTGAGCTGACTGGAGTGAGGACCCCAGAAGAAGAAAAGCTACATCGAGATGTATTCCTGCCCTCGGTGGACAATCTGAAGCTGCCAGAGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGCTGACTGGAGTGAGGA
59.89
CTTCCCTTGGCCGTGAATCT
60.04
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGCTGACTGGAGTGAGGA
59.89
TCTTCCCTTGGCCGTGAATC
60.04
150
PCR template sequence:
CTCAAGTTGTTTGAGCTGACTGGAGTGAGGACCCCAGAAGAAGAAAAGCTACATCGAGATGTATTCCTGCCCTCGGTGGACAATCTGAAGCTGCCAGAGACCATGTTTCCTGAAAGACTGGGAACTGCAGGTGCACTTCAAGATTCACGGCCAAGGGAAGAAGAATCTGCACGGAGACGGCTTGGCAATCTGGTACACAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AAGCTGCCAGAGACCATGTTTCCTGA
siRNA sets
AAACATGGTCTCTGGCAGC, AACATGGTCTCTGGCAGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCLMAN2L_598_ORF_1
1.0051
0.257831522
0.92575485
675
ORF sequence:
ATGCAGCCAGGGCCTGTGTTTGGAAACATGGACAAATTTGTGGGGCTGGGAGTGTTTGTAGACACCTATCCCAATGAGGAGAAGCAGCACGAGCGGGTATTCCCCTACATCTCAGCCATGGTGAACAACGGCTCCCTCAGCTATGATCACGAGCGGGATGGGCGGCCTACAGAGCTGGGTGGCTGCACAGCCATTGTCCGAAATATCCGTTATGACACCTTCCTCGTGATTCGCTATGTCAAGAGGCATCTGACGATAATGATGGATATTGATGGCAAACATGAGTGGAGGGACTGCATTGAGATGCCCGGGGTCCGGCTCCCCCGGGGCTATTACTTCGGCACTTCCTCCATTACTGGGGATCTCTCTGATAACCATGATGTCATTTCCCTCAAGTTGTTTGAGCTGACTGGAGTGAGGACCCCAGAAGAAGAAAAGCTACATCGAGATGTATTCCTGCCCTCGGTGGACAATCTGAAGCTGCCAGAGACCATGTTTCCTGAAAGACTGGGAACTGCAGGTGCACTTCAAGATTCACGGCCAAGGGAAGAAGAATCTGCACGGAGACGGCTTGGCAATCTGGTACACAAAGGACCGAATGCAGCCAGGGCCTGTGTTTGGAAACATGGACAAATTTGTGGGGCTGGGAGTGTTTGTAGACACCTATCCCAATGA
Peptide sequence:
MQPGPVFGNMDKFVGLGVFVDTYPNEEKQHERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNIRYDTFLVIRYVKRHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTGVRTPEEEKLHRDVFLPSVDNLKLPETMFPERLGTAGALQDSRPREEESARRRLGNLVHKGPNAARACVWKHGQICGAGSVCRHLSQ
IRESfinder result
IRESfinder score
0.347935041
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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