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mmu_circLimch1_70
Basic information of circular RNA
PanCircBase ID:
mmu_circLimch1_70
mm39_Chr. Position ID:
chr5|67039241|67039311|+
Gene name:
Limch1
Transcript:
ENSMUST00000201852.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
70
Exon/intron sizes in nt:
70
Flanking exon/introns:
chr5:67015296-67039241|chr5:67039311-67111011
Splice length:
70
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAAAGATCAATAGATTGCCTACCCCCATTGCAGGATTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGATTGCCTACCCCCATTGC
60.11
TTTTAACAAGTCCTGGCTTTATAG
55.12
62
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATTGCCTACCCCCATTGCA
60.4
TTTTAACAAGTCCTGGCTTTATAG
55.12
61
PCR template sequence:
AGATCAATAGATTGCCTACCCCCATTGCAGGATTGGTTGCTGAATGCTATAAAGCCAGGACTTGTTAAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CATTGCAGGATTGGTTGCTGAATGCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.628320322
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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