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mmu_circLarp4b_359
Basic information of circular RNA
PanCircBase ID:
mmu_circLarp4b_359
mm39_Chr. Position ID:
chr13|9208158|9208838|+
Gene name:
Larp4b
Transcript:
ENSMUST00000188211.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
12,13
Exon/intron offsets:
0,428
Genomic length:
680
Exon/intron sizes in nt:
1,07,252
Flanking exon/introns:
chr13:9201260-9208158|chr13:9208838-9214710
Splice length:
359
Other database IDs:
CIRCpedia: MMU_CIRCpedia_220122, circAtlas: mmu-Larp4b_0027
Human Ortholog IDs:
Mature spliced Sequence:
GTAACTCCTTTTCCAAGTACTGGATTTATAAATGGGTTTACATCTCCGACCTTCAAACCTGCAACGTCTCCTCTGACATCACTCAGACAGTATCCTCCTAGAAGCAGGAATCCTAGTAAGTCTCATCTGCGCCATGCGATTCCTAGTACAGAGAGAGGGCCTGGGCTGCTAGAAAGTCCTTCAATATTTAACTTCACTGCAGATCGATTAATTAATGGTGTCCGGAGCCCACAGACGAGGCAAGCAGGGCAAACTAGAACACGAATACAAAACCCTTCAGCTTATGCCAAGAGAGAGATTGGAACTGGGCGTGTGGAGCCAAGTAGTCTTGAATCCTCTCCTGGTTTAGGGAGAGGAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGATTGGAACTGGGCGTG
60.04
CAGAGGAGACGTTGCAGGTT
59.97
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGAGATTGGAACTGGGCGT
59.75
CAGAGGAGACGTTGCAGGTT
59.97
142
PCR template sequence:
CACGAATACAAAACCCTTCAGCTTATGCCAAGAGAGAGATTGGAACTGGGCGTGTGGAGCCAAGTAGTCTTGAATCCTCTCCTGGTTTAGGGAGAGGAAGGTAACTCCTTTTCCAAGTACTGGATTTATAAATGGGTTTACATCTCCGACCTTCAAACCTGCAACGTCTCCTCTGACATCACTCAGACAGTATCCTCCTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-34c-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TAGGGAGAGGAAGGTAACTCCTTTTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.700975101
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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