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mmu_circKank1_3884
Basic information of circular RNA
PanCircBase ID:
mmu_circKank1_3884
mm39_Chr. Position ID:
chr19|25386449|25408443|+
Gene name:
Kank1
Transcript:
ENSMUST00000049400.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
5,6,7,8,9,10,11,12
Exon/intron offsets:
0,13058,13833,15052,16811,18891,21135,21793
Genomic length:
21994
Exon/intron sizes in nt:
2,67,91,98,10,92,46,88,00,00,00,000
Flanking exon/introns:
chr19:25355894-25386449|chr19:25408443-25410228
Splice length:
3884
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
AAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGTCAAATACGTGGATGACATACAAAAGGGAAATACTATCAAGAAACTGAACATCCAGAAGAGGCGAAAGCCATCTGTGCCATGTCCAGAAGTCAGGGCCATACCTGGTCATCAAGGTGTGTGGACTTCCACTGAGTCTCTGTCATCCTCCAACAGTGATGACAGCAAGCAGTGTCCCAGCTTCCTGCTAGCCAGAAGCCACGTTACTTCAACCCCAATCCCACGGCCACCTGCCCCGCTAGAGACCTCACCCACTTTTGCTGTGTCAGAAAACCGACAGCTGCTGCCCCCTCCCTCACCACAACTCCCCAGGCACAACCTCCATGTCACCAAGACGTTGATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAGGAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACGTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGGTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGGTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATGAGGATCTGTCTGAACACCCTCCAGCACGATTGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAGACGTGTGCAATGTGGATCACCAGAACAAGGCAGGGTACACACCCATCATGCTGGCAGCCCTCGCGGCCGTGGAGGCAGAGAAGGACATGCAGGTCGTAGAAGAACTCTTCAGCTGTGGAGACGTGAACGCCAAGGCCAGTCAGGCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACACGGGCATGTGGAGATT
59.96
GGGGTTTCCACAAAATACGGG
59.45
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTGATGTGTGCCAGTGAA
60.25
GGGGTTTCCACAAAATACGGG
59.45
159
PCR template sequence:
GGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAATAAAAAGCAGACGGAGTTCTGAATGGAGACCATAACAAGGAAAAGAAAGACCCGTATTTTGTGGAAACCCCTTACGGTTTTCAGCTAGACTTAGATTTCGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
35
Interacting miRNAs (#binding sites)
mmu-miR-207(3), mmu-miR-670-5p(3), mmu-miR-136-5p(2), mmu-miR-335-3p(2), mmu-miR-9-5p(1), mmu-miR-134-5p(1), mmu-miR-15a-5p(1), mmu-miR-32-5p(1), mmu-miR-7b-5p(1), mmu-miR-135a-5p(1), mmu-miR-34c-5p(1), mmu-miR-92a-3p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-132-3p(1), mmu-miR-23a-3p(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-127-3p(1), mmu-miR-433-3p(1), mmu-miR-363-3p(1), mmu-miR-676-3p(1), mmu-miR-96-5p(1), mmu-miR-212-3p(1), mmu-miR-183-5p(1), mmu-miR-362-5p(1), mmu-miR-297a-5p(1), mmu-miR-224-5p(1), mmu-miR-129-5p(1), mmu-miR-673-5p(1), mmu-miR-669d-5p(1), mmu-miR-188-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTGGAAGACAATAAAAAGCAGACGG
siRNA sets
CTGCTTTTTATTGTCTTCC, TGCTTTTTATTGTCTTCCA, CTTTTTATTGTCTTCCAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCKANK1_3884_ORF_1
1.2622
0.425096235
1
3468
ORF sequence:
ATGGAGACCCGGAGAAGACTGGAACAGGAGCGAGTCACCATGCAGATGGCACCGGGTGACTTCAGGAGGCCCAGGCTGGCCAGTTTTGGAGGCATGGGCTCCACAAGCTCCCTCCCGTCCTTTGTGGGGTCTGCTAACCACAGTTCTGCAATACACCAGCTTCAGAATGGCTACCAAGGCAATGGGGATTATAACAGCTACGTCCCAGCAGCTCCTACCACGTCTTCCATGGGAAGCTCCGTCCGGCACAGCCCATTGAGTTCAGGGATCTCCACCCCAGTGACCAACGTGAGCCCCATGCACCTGCAGCACATCCGAGAGCAGATGGCCATCGCCTTAAAACGCCTGAAGGAGCTTGAGGAGCAGGTGAGGACCATCCCTGTGCTCCAGGTCAAGATCTCCGTCTTGCAAGAAGAGAAAAGGCAGTTGGCCTCGCAGCTGAAAAGCCAGAGGGCCTCGTCCCAGAACGAAGCGTGCGGTGTGAGGAAACGCTCCTACAGTGCGGGCAACGCCTCCCAGCTGGAACTGCTTGCCCGAGCCCGAAGAGGCGGCGGGGAATTGTACATCGACTACGAGGAGGAAGAGATGGAGAGCGTAGAGCAGAGCACGCAGCGGATCCAGGAGTTCCGACAGCTCACGGCCGACATGCAGGCGCTGGAGCGGAAGATTCAGGATAGCAGCTGCGAGGTGGCATCAGAGCTCAGGGAGAATGGGCAGTGCCCGTCTCGGGAGTGCAAGTCTGTGGCCGTGGGTAGTGATGAGAACATGAACGATGTCGTTGTATACCACAGAGACTTAAGGCCCTGCAAGGATACGGCTGTGGGGACGGTCACCGAGACGAGGAATGTTGGCATCAGCGTGACAGAAGCTATGCTTGGGGTTATCACTGAAGCTGACAAAGAGATTGAGCTGCAGCAGCAGACCATAGAGGCCTTGAAGGAGAAGATTTACCGCCTAGAAGTACAGCTTAAAGAAACCACCCATGACCGCGAGATGACTAAGCTCAAGCAAGAACTACAGGCTGCCGGATCCAGGAAGAAAGTTGACAAGGCCACAATGGCCCAGCCACTTGTCTTCAGCAAGTTGGTGGAGGCACTGGTGCCAACCAGAGATCAAATGGTTGGCAGTCATGTGGACACAAGGGAGTCATGTGTTGGGACCTCTGTGCAAACTAGTAGCGTAGGCACCTCCTGCCATCCTGACTGCAAGAACCAAGTCGTGGGATCCGAGCTGCCCATGAATTGGTGGGTCGTGAAGGAGAGGGTGGCAATGCATGACCAATGCGTAGGGAGGTCTGTTGAGACTTGTGACCGGAGTGTGGGTGTGGAAGTCAGTGTCTGTGAAACAGGCAGCAACACAGAGGCTTCTGGGAGCGACCTGACACTCCTTAAGACAAACTTGAACCTCAAAGACGTGCGGTCCATCGGCTGTGGAGATTGTTCCGTGGATGTGATTGTCTGCTTCCCCAAGGAGTGCACCTCCCGAAGCATGAACACGGAGGCTGTAGGCCAGGAGGAAGCAGCTGTCATGGCGGTGCCCCATACCACAGACCAGCACACCAGCACGAATCTGGAGCGGGTGGACCAGTGCACTAACACAGAGGCAGCCACCCTGGTGGAGTCCTGCACCAACACTCTCCTCAGCACTATGGACAAGCAGACCAGCACCCAGACTGTGGAGATGCGAACGGTGGCCATCGGAGAAGGCCGCGTCAGAGACATCAACCCCTCCACTAAGACTCGGTCCGTTGGTGTCGGGACAGTGCTGTCTGGCAATTCTGAGTTTGACAGGCCATGTGCTGTGAAGACCAAAGAGTCGGGTGTGGGACAGATAAATATTCAGGACAACTATCTAGTTGGTCTCAAAATGCGGACCATAGCGTGCGGGCCTCCACAGTTGACTGTGGGGCTGATGGGCAGCAGGAGGAGCGTGGGTGTTGGGAACGAGCCCGTAGGAGAGCTCCCGGAGGAGTCTCCTCAGCCTCGGGTGGCGTCTGGAATGGTGACTGGCTTGGATCACTACATTGAGCGCGTGCAGAGGCTGCTGGCAGAGCAACAGACGTTGCTGGCTGAGAACTACAGTGAGCTGGCGGAGGCTTTTGGGGAGCCTCATTCACAGATTGGCTCCCTCAACTCGCAGCTCATCAGCACCCTGTCGTCCATCAATTCCGTCATGAAGTCTGCAAGCACCGAGGAGCTCAGGAACTCTGACTTCCAGAAAGCCAGTCTGGGTAAAACTACAGGAAATCACTTGGAATATACCTGCAAGTGTGGAGGCCTTCGGTCAGGAGGACTGTTAAATGTACAACCATCCCAGCCTGAGGTGGAGGCGGAGACTGCAGAAGGCAAGCACAGCCGGGGCCATGAGCAGTTCCCCATGCAAGGAAGTACCCTGCCCCCGGTGAACCTGACAGATGACCAGATAGCCACTGGCCTCTACGTATGTCCAAATAATGAAAACACACTGAAGTCCATCATGAAGAAAAGTGATGGGAATAAAGATTCAAATGGAGCCAAAAAGAATCTTCAGTTCATTGGCATTAACGGCGGGTATGAGACAACTTCAAGTGACGAATCCAGCTCGGATGGAAGCTCTTCTTCCGAGTCAGATGACGAGTGTGACACCATTGGGTACCCTCCCGAGGAAGAGGAGGAGGAGGAAGAGAAGGACCACGACACTCGGGGAATGGCGGAAGGGCACCACGCAGTTAATATTGAAGGTTTCAAGTCTGCCAGGGTGGAAGATGAAGTGCAGGTTCCAGAATGTGAGCCTGAGAAGGAGGAAATCAGAGAGAGGTATGAACTAAGTGAAAAGATGTTGTCAGCCTGCAACTTACTGAAATACAACATAAAGGATCCCAAAGCTTTGGCCAGCAAAGATATGAGGATCTGTCTGAACACCCTCCAGCACGATTGGTTCCGAGTGTCCAGTCAGAAGTCCGCCGTGCCAGCCATGGTGGGCGACTACATCGCCGCGTTCGAGGCTGTCTCCCCGGACGTGCTCCGGTACATCATCAACATGGCGGACGGCAATGGCAACACTGCCCTCCACTACAGCGTGTCCCACTCCAACTTCCAGATCGTCAAGCTGCTTCTGGATGCAGACGTGTGCAATGTGGATCACCAGAACAAGGCAGGGTACACACCCATCATGCTGGCAGCCCTCGCGGCCGTGGAGGCAGAGAAGGACATGCAGGTCGTAGAAGAACTCTTCAGCTGTGGAGACGTGAACGCCAAGGCCAGTCAGGCGGGACAGACGGCCCTCATGCTAGCTGTCAGTCACGGGCGGATAGACATGGTGAAGGGCCTGCTGGCCTGTGGAGCTGATGTCAATATCCAGGACGACGAGGGCTCCACCGCCCTGATGTGTGCCAGTGAACACGGGCATGTGGAGATTGTGAAGCTGCTGCTGGCCCAGCCAGGCTGCAATGGCCACCTGGAAGACAATAAAAAGCAGACGGAGTTCTGA
Peptide sequence:
METRRRLEQERVTMQMAPGDFRRPRLASFGGMGSTSSLPSFVGSANHSSAIHQLQNGYQGNGDYNSYVPAAPTTSSMGSSVRHSPLSSGISTPVTNVSPMHLQHIREQMAIALKRLKELEEQVRTIPVLQVKISVLQEEKRQLASQLKSQRASSQNEACGVRKRSYSAGNASQLELLARARRGGGELYIDYEEEEMESVEQSTQRIQEFRQLTADMQALERKIQDSSCEVASELRENGQCPSRECKSVAVGSDENMNDVVVYHRDLRPCKDTAVGTVTETRNVGISVTEAMLGVITEADKEIELQQQTIEALKEKIYRLEVQLKETTHDREMTKLKQELQAAGSRKKVDKATMAQPLVFSKLVEALVPTRDQMVGSHVDTRESCVGTSVQTSSVGTSCHPDCKNQVVGSELPMNWWVVKERVAMHDQCVGRSVETCDRSVGVEVSVCETGSNTEASGSDLTLLKTNLNLKDVRSIGCGDCSVDVIVCFPKECTSRSMNTEAVGQEEAAVMAVPHTTDQHTSTNLERVDQCTNTEAATLVESCTNTLLSTMDKQTSTQTVEMRTVAIGEGRVRDINPSTKTRSVGVGTVLSGNSEFDRPCAVKTKESGVGQINIQDNYLVGLKMRTIACGPPQLTVGLMGSRRSVGVGNEPVGELPEESPQPRVASGMVTGLDHYIERVQRLLAEQQTLLAENYSELAEAFGEPHSQIGSLNSQLISTLSSINSVMKSASTEELRNSDFQKASLGKTTGNHLEYTCKCGGLRSGGLLNVQPSQPEVEAETAEGKHSRGHEQFPMQGSTLPPVNLTDDQIATGLYVCPNNENTLKSIMKKSDGNKDSNGAKKNLQFIGINGGYETTSSDESSSDGSSSSESDDECDTIGYPPEEEEEEEEKDHDTRGMAEGHHAVNIEGFKSARVEDEVQVPECEPEKEEIRERYELSEKMLSACNLLKYNIKDPKALASKDMRICLNTLQHDWFRVSSQKSAVPAMVGDYIAAFEAVSPDVLRYIINMADGNGNTALHYSVSHSNFQIVKLLLDADVCNVDHQNKAGYTPIMLAALAAVEAEKDMQVVEELFSCGDVNAKASQAGQTALMLAVSHGRIDMVKGLLACGADVNIQDDEGSTALMCASEHGHVEIVKLLLAQPGCNGHLEDNKKQTEF
IRESfinder result
IRESfinder score
0.286452467
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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