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mmu_circIpo11_1269
Basic information of circular RNA
PanCircBase ID:
mmu_circIpo11_1269
mm39_Chr. Position ID:
chr13|106983853|107023265|-
Gene name:
Ipo11
Transcript:
ENSMUST00000186033.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
26,25,24,23,22,21,20,19,18,17,16,15,14,13,12
Exon/intron offsets:
0,895,9392,9883,10153,13515,18519,23329,28145,28893,29589,32267,35496,36180,39321
Genomic length:
39412
Exon/intron sizes in nt:
114,96,81,80,27,77,116,114,117,41,34,127,106,48,91
Flanking exon/introns:
chr13:106978718-106983853|chr13:107023265-107025870
Splice length:
1269
Other database IDs:
CIRCpedia: MMU_CIRCpedia_1892, circAtlas: mmu-Ipo11_0050
Human Ortholog IDs:
Mature spliced Sequence:
CCTTGCACTGAAGTATTATTTATAGATATATTCCACGAATATAATCAAACTCTTACTCCTGTACTTCTAGAAATGATGCAAACTCTTGAAGGTCCAACCAATGTAGAAGATATGAATGCACTGTTAATCAAAGATGCTGTGTATAATGCTGTGGGATTAGCTGCTTTTGAGCTGTTTGACAGTGTTGATTTTGATCAGTGGTTTAAAACCCAACTTCTTCCCGAATTACAAGTTTCTCATAATAGGTATAAGCCATTACGACGCAGGGTGATTTGGCTCATTGGTCAGTGGATTTCTGTGAAATTCAAGTCTGACTTGAGACCCATGCTGTATGAAGCAATCTGTAACTTGCTTCAAGATCAGGATTTAGTGGTCCGAATTGAAACAGCAACAACTCTGAAGTTAACTGTTGATGATTTTGAATTTAGGACAGATCAGTTTTTACCGTATCTGGAAACCATGTTCACACTGCTTTTCCAGTTGCTGCAGCAGGTTACAGAGTGTGATACAAAGATGCACGTGCTGCACGTCCTCTCCTGTGTGATCGAAAGAGTCAACGTGCAGATCCGACCATATGTGGGGTGTTTGGTACAGTATTTGCCTCTTCTCTGGAAGCAGAGCGAAGAACACAACATGCTGCGATGCGCTATTCTGACAACACTTATCCACCTTGTTCAGGGATTAGGAGCAGACAGCAAGAACCTGTACCCTTTCCTGCTCCCAGTTATCCAGCTGAGTACAGATGTGTCTCAGCCTCCACATGTCTATCTTCTGGAAGATGGCCTGGAGTTATGGTTAGTGACATTGGAGAACAGCCCATGTGTCACACCAGAGCTGCTTCGTATATTTCAGAACATGTCACCTCTTCTTGAGCTTCCATCCAGCTGCCTTGCAAACGAATTAAGTTCAGAGAATCTCAGAACCTGCTTTAAGATCATCAATGGCTATATCTTTTTATCATCAACAGAATTTTTACAGACATATGCAGCAGGTTTGTGCCAGTCCTTTTATGAGCTGCTACCAGAGATTACTACAGAAGGTCAAGTTCAAGTGCTGAAGGTTGTGGAAAATGCCCTTAAAGTGAATCCAGTATTAGGCCCACAGATGTTTCAGCGAATTCTACCCTGTGTTTTCAGAGGTGTTATTGAAGGCGAGAGGTATCCAGTAGTGATGTCCATTTATCTTGCTGTCATGGGTCGAGTCTTACTCCAGAATACCAGCTTCTTTTCTTCACTTCTTAATGAGATGGGACACGAGTTTAATCAGGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGTCATGGGTCGAGTCTT
59.75
TGGACCTTCAAGAGTTTGCA
57.27
180
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGTCGAGTCTTACTCCAGA
59.65
GGTTGGACCTTCAAGAGTTTGC
59.97
176
PCR template sequence:
GATGTCCATTTATCTTGCTGTCATGGGTCGAGTCTTACTCCAGAATACCAGCTTCTTTTCTTCACTTCTTAATGAGATGGGACACGAGTTTAATCAGGAGCCTTGCACTGAAGTATTATTTATAGATATATTCCACGAATATAATCAAACTCTTACTCCTGTACTTCTAGAAATGATGCAAACTCTTGAAGGTCCAACCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-429-3p(1), mmu-miR-103-3p(1), mmu-miR-135a-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-138-5p(1), mmu-miR-107-3p(1), mmu-miR-499-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-129-5p(1), mmu-miR-3470b(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTTAATCAGGAGCCTTGCACTGAAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCIPO11_1269_ORF_1
0.9746
0.072397272
0.999999544
2466
ORF sequence:
ATGATGCAAACTCTTGAAGGTCCAACCAATGTAGAAGATATGAATGCACTGTTAATCAAAGATGCTGTGTATAATGCTGTGGGATTAGCTGCTTTTGAGCTGTTTGACAGTGTTGATTTTGATCAGTGGTTTAAAACCCAACTTCTTCCCGAATTACAAGTTTCTCATAATAGGTATAAGCCATTACGACGCAGGGTGATTTGGCTCATTGGTCAGTGGATTTCTGTGAAATTCAAGTCTGACTTGAGACCCATGCTGTATGAAGCAATCTGTAACTTGCTTCAAGATCAGGATTTAGTGGTCCGAATTGAAACAGCAACAACTCTGAAGTTAACTGTTGATGATTTTGAATTTAGGACAGATCAGTTTTTACCGTATCTGGAAACCATGTTCACACTGCTTTTCCAGTTGCTGCAGCAGGTTACAGAGTGTGATACAAAGATGCACGTGCTGCACGTCCTCTCCTGTGTGATCGAAAGAGTCAACGTGCAGATCCGACCATATGTGGGGTGTTTGGTACAGTATTTGCCTCTTCTCTGGAAGCAGAGCGAAGAACACAACATGCTGCGATGCGCTATTCTGACAACACTTATCCACCTTGTTCAGGGATTAGGAGCAGACAGCAAGAACCTGTACCCTTTCCTGCTCCCAGTTATCCAGCTGAGTACAGATGTGTCTCAGCCTCCACATGTCTATCTTCTGGAAGATGGCCTGGAGTTATGGTTAGTGACATTGGAGAACAGCCCATGTGTCACACCAGAGCTGCTTCGTATATTTCAGAACATGTCACCTCTTCTTGAGCTTCCATCCAGCTGCCTTGCAAACGAATTAAGTTCAGAGAATCTCAGAACCTGCTTTAAGATCATCAATGGCTATATCTTTTTATCATCAACAGAATTTTTACAGACATATGCAGCAGGTTTGTGCCAGTCCTTTTATGAGCTGCTACCAGAGATTACTACAGAAGGTCAAGTTCAAGTGCTGAAGGTTGTGGAAAATGCCCTTAAAGTGAATCCAGTATTAGGCCCACAGATGTTTCAGCGAATTCTACCCTGTGTTTTCAGAGGTGTTATTGAAGGCGAGAGGTATCCAGTAGTGATGTCCATTTATCTTGCTGTCATGGGTCGAGTCTTACTCCAGAATACCAGCTTCTTTTCTTCACTTCTTAATGAGATGGGACACGAGTTTAATCAGGAGCCTTGCACTGAAGTATTATTTATAGATATATTCCACGAATATAATCAAACTCTTACTCCTGTACTTCTAGAAATGATGCAAACTCTTGAAGGTCCAACCAATGTAGAAGATATGAATGCACTGTTAATCAAAGATGCTGTGTATAATGCTGTGGGATTAGCTGCTTTTGAGCTGTTTGACAGTGTTGATTTTGATCAGTGGTTTAAAACCCAACTTCTTCCCGAATTACAAGTTTCTCATAATAGGTATAAGCCATTACGACGCAGGGTGATTTGGCTCATTGGTCAGTGGATTTCTGTGAAATTCAAGTCTGACTTGAGACCCATGCTGTATGAAGCAATCTGTAACTTGCTTCAAGATCAGGATTTAGTGGTCCGAATTGAAACAGCAACAACTCTGAAGTTAACTGTTGATGATTTTGAATTTAGGACAGATCAGTTTTTACCGTATCTGGAAACCATGTTCACACTGCTTTTCCAGTTGCTGCAGCAGGTTACAGAGTGTGATACAAAGATGCACGTGCTGCACGTCCTCTCCTGTGTGATCGAAAGAGTCAACGTGCAGATCCGACCATATGTGGGGTGTTTGGTACAGTATTTGCCTCTTCTCTGGAAGCAGAGCGAAGAACACAACATGCTGCGATGCGCTATTCTGACAACACTTATCCACCTTGTTCAGGGATTAGGAGCAGACAGCAAGAACCTGTACCCTTTCCTGCTCCCAGTTATCCAGCTGAGTACAGATGTGTCTCAGCCTCCACATGTCTATCTTCTGGAAGATGGCCTGGAGTTATGGTTAGTGACATTGGAGAACAGCCCATGTGTCACACCAGAGCTGCTTCGTATATTTCAGAACATGTCACCTCTTCTTGAGCTTCCATCCAGCTGCCTTGCAAACGAATTAAGTTCAGAGAATCTCAGAACCTGCTTTAAGATCATCAATGGCTATATCTTTTTATCATCAACAGAATTTTTACAGACATATGCAGCAGGTTTGTGCCAGTCCTTTTATGAGCTGCTACCAGAGATTACTACAGAAGGTCAAGTTCAAGTGCTGAAGGTTGTGGAAAATGCCCTTAAAGTGAATCCAGTATTAGGCCCACAGATGTTTCAGCGAATTCTACCCTGTGTTTTCAGAGGTGTTATTGAAGGCGAGAGGTATCCAGTAGTGATGTCCATTTATCTTGCTGTCATGGGTCGAGTCTTACTCCAGAATACCAGCTTCTTTTCTTCACTTCTTAATGAGATGGGACACGAGTTTAATCAGGAG
Peptide sequence:
MMQTLEGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELPSSCLANELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENALKVNPVLGPQMFQRILPCVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNEMGHEFNQEPCTEVLFIDIFHEYNQTLTPVLLEMMQTLEGPTNVEDMNALLIKDAVYNAVGLAAFELFDSVDFDQWFKTQLLPELQVSHNRYKPLRRRVIWLIGQWISVKFKSDLRPMLYEAICNLLQDQDLVVRIETATTLKLTVDDFEFRTDQFLPYLETMFTLLFQLLQQVTECDTKMHVLHVLSCVIERVNVQIRPYVGCLVQYLPLLWKQSEEHNMLRCAILTTLIHLVQGLGADSKNLYPFLLPVIQLSTDVSQPPHVYLLEDGLELWLVTLENSPCVTPELLRIFQNMSPLLELPSSCLANELSSENLRTCFKIINGYIFLSSTEFLQTYAAGLCQSFYELLPEITTEGQVQVLKVVENALKVNPVLGPQMFQRILPCVFRGVIEGERYPVVMSIYLAVMGRVLLQNTSFFSSLLNEMGHEFNQE
IRESfinder result
IRESfinder score
0.754277534
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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