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mmu_circIno80_2963
Basic information of circular RNA
PanCircBase ID:
mmu_circIno80_2963
mm39_Chr. Position ID:
chr2|119232810|119281931|-
Gene name:
Ino80
Transcript:
ENSMUST00000049920.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
23
Exon/intron indexes:
28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6
Exon/intron offsets:
0,4486,10072,15991,21275,22929,23375,24259,24570,26147,28658,29598,30861,31819,37045,39283,40053,42117,43131,44526,45875,47673,49000
Genomic length:
49121
Exon/intron sizes in nt:
95,12,82,26,14,11,72,90,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:119223406-119232810|chr2:119281931-119284536
Splice length:
2963
Other database IDs:
CIRCpedia: MMU_CIRCpedia_4737, circAtlas: mmu-Ino80_0033
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
TTGCAGCAGTACCAGTACTACAGTGCAGGCCTGCTCTCTACATACGACCCTTTCTATGAGCAACAGCGCCACTTGCTTGGACCCAAAAAGAAGAAATTCAAGGAAGACAAGAAGCTTAAAGCCAAGTTGAAAAAAGTGAAGAAAAAAAGAAGACGTGATGAAGAGTTTTCCTCTGAAGAATCTCCACGTCACCACCATCACCAGACCAAAGTCTTTGCTAAGTTTTCTCATGATGCACCTCCCCCTGGCACCAAGAAGAAACACTTATCCATTGAGCAGCTTAATGCCCGCCGCAGGAAAGTGTGGCTGAGCATCGTGAAAAAGGAACTACCAAAGGCCAACAAGCAGAAGTCTTCAGCTCGAAACTTATTTCTTACCAATAGCCGAAAGCTTGCCCATCAATGCATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAGAAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACCAGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAATGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATATGAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGAAGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCTCTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGATTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCTGCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTACATGAGGCTGGATGGC
60.25
TGGCGCTGTTGCTCATAGAA
60.04
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTACATGAGGCTGGATGGC
60.25
AAGTGGCGCTGTTGCTCATA
60.32
144
PCR template sequence:
TGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAGTTGCAGCAGTACCAGTACTACAGTGCAGGCCTGCTCTCTACATACGACCCTTTCTATGAGCAACAGCGCCACTTGCTTGGACCCAAAAAGAAGAAATTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
31
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-709(2), mmu-miR-203-3p(2), mmu-miR-138-5p(2), mmu-miR-185-5p(2), mmu-miR-140-5p(1), mmu-let-7a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-32-5p(1), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-495-3p(1), mmu-let-7d-5p(1), mmu-miR-218-5p(1), mmu-miR-511-3p(1), mmu-miR-362-5p(1), mmu-miR-107-3p(1), mmu-miR-666-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-207(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTTTCAGACCAGTTGCAGCAGTACC
siRNA sets
TACTGCTGCAACTGGTCTG, GTACTGCTGCAACTGGTCT, ACTGCTGCAACTGGTCTGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCINO80_2963_ORF_1
0.7637
0.124435039
0.999999881
2688
ORF sequence:
ATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAGAAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACCAGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAATGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATATGAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGAAGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCTCTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGATTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCTGCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAGTTGCAGCAGTACCAGTACTACAGTGCAGGCCTGCTCTCTACATACGACCCTTTCTATGAGCAACAGCGCCACTTGCTTGGACCCAAAAAGAAGAAATTCAAGGAAGACAAGAAGCTTAAAGCCAAGTTGA
Peptide sequence:
MKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGINEGSCFSFLRFIDVSPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWAEPDGTSHQSYLRNKDFLLGVDFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDHVVHQRRSATSSLRCCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERGVLKEGGSLAAKQCLLNGAPELATDWLSRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTSCSSTSTTVQACSLHTTLSMSNSATCLDPKRRNSRKTRSLKPS
IRESfinder result
IRESfinder score
0.601853082
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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