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mmu_circIno80_2915
Basic information of circular RNA
PanCircBase ID:
mmu_circIno80_2915
mm39_Chr. Position ID:
chr2|119223333|119280698|-
Gene name:
Ino80
Transcript:
ENSMUST00000049920.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
23
Exon/intron indexes:
29,28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7
Exon/intron offsets:
0,9477,13963,19549,25468,30752,32406,32852,33736,34047,35624,38135,39075,40338,41296,46522,48760,49530,51594,52608,54003,55352,57150
Genomic length:
57365
Exon/intron sizes in nt:
7,39,51,28,22,61,41,17,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:119213989-119223333|chr2:119280698-119281810
Splice length:
2915
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CCAAGTTGAAAAAAGTGAAGAAAAAAAGAAGACGTGATGAAGAGTTTTCCTCTGAAGAATCTCCACGTCACCACCATCACCAGACCAAAGTCTTTGCTAAGTTTTCTCATGATGCACCTCCCCCTGGCACCAAGAAGAAACACTTATCCATTGAGCAGCTTAATGCCCGCCGCAGGAAAGTGTGGCTGAGCATCGTGAAAAAGGAACTACCAAAGGCCAACAAGCAGAAGTCTTCAGCTCGAAACTTATTTCTTACCAATAGCCGAAAGCTTGCCCATCAATGCATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAGAAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACCAGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAATGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATATGAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGAAGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCTCTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGATTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCTGCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAGGAACGACATCTTTGTGTTTCTGTTAAGCACGCGAGCTGGAGGACTGGGTATCAATCTCACAGCTGCAGACACA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTTCTGTTAAGCACGCGAGC
59.49
TTGGTCTGGTGATGGTGGTG
59.89
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTTCTGTTAAGCACGCGAGC
59.49
GGTCTGGTGATGGTGGTGAC
60.32
143
PCR template sequence:
GGACATGGTGGCTGATTTTCAGACCAGGAACGACATCTTTGTGTTTCTGTTAAGCACGCGAGCTGGAGGACTGGGTATCAATCTCACAGCTGCAGACACACCAAGTTGAAAAAAGTGAAGAAAAAAAGAAGACGTGATGAAGAGTTTTCCTCTGAAGAATCTCCACGTCACCACCATCACCAGACCAAAGTCTTTGCTAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
31
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-709(2), mmu-miR-203-3p(2), mmu-miR-138-5p(2), mmu-miR-185-5p(2), mmu-miR-140-5p(1), mmu-let-7a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-32-5p(1), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-298-5p(1), mmu-miR-7a-5p(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-495-3p(1), mmu-let-7d-5p(1), mmu-miR-218-5p(1), mmu-miR-511-3p(1), mmu-miR-362-5p(1), mmu-miR-107-3p(1), mmu-miR-666-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-207(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGCTGCAGACACACCAAGTTGAAAAA
siRNA sets
TTTTTCAACTTGGTGTGTC, TTTCAACTTGGTGTGTCTG, TTTTCAACTTGGTGTGTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCINO80_2915_ORF_1
0.7637
0.135801069
0.99999984
2640
ORF sequence:
ATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAGAAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACCAGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAATGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATATGAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGAAGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCTCTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGATTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCTGCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAGGAACGACATCTTTGTGTTTCTGTTAAGCACGCGAGCTGGAGGACTGGGTATCAATCTCACAGCTGCAGACACACCAAGTTGA
Peptide sequence:
MKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGINEGSCFSFLRFIDVSPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWAEPDGTSHQSYLRNKDFLLGVDFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDHVVHQRRSATSSLRCCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERGVLKEGGSLAAKQCLLNGAPELATDWLSRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTPS
IRESfinder result
IRESfinder score
0.607960533
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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